Os06g0637400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0637400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.78 | 0.543 | 2.92 | -0.218 | 0.243 | 7.3 | 0.117 | -32 | -0.00372 | 4.86 | 20 | 30 | 7 | 1 |
| 154.4 | 0.579 | 2.93 | -0.189 | 0.273 | 2.45 | 0.249 | -- | -0.00772 | 4.05 | 21.15 | 56 | 7.67 | 1.42 |
| 135.81 | 0.543 | 2.92 | -0.218 | 0.243 | 7.3 | -- | -32 | -0.00372 | 4.86 | 20 | 30 | 7 | 1 |
| 143.27 | 0.557 | 2.95 | -0.278 | 0.173 | 2.5 | -- | -- | -0.0985 | 4.6 | 19.2 | 174 | 6.27 | 0.833 |
| 138.94 | 0.549 | 2.92 | -0.208 | -- | 7.27 | -- | -31.5 | 0.0025 | -- | 19.98 | 31 | 7 | 1.04 |
| 160.1 | 0.593 | 2.91 | -0.223 | 0.28 | -- | -0.366 | -- | -0.0298 | 5.76 | -- | -- | -- | -- |
| 160.36 | 0.593 | 2.91 | -0.226 | 0.28 | -- | -- | -- | -0.0287 | 5.33 | -- | -- | -- | -- |
| 138.96 | 0.549 | 2.91 | -0.124 | -- | 5.08 | -- | -- | 0.00276 | -- | 18.91 | 164 | 6.35 | 0.741 |
| 136.33 | 0.544 | 2.91 | -- | 0.24 | 5.06 | -- | -- | 0.0112 | 4.97 | 19.07 | 154 | 6.35 | 0.72 |
| 164.45 | 0.599 | 2.92 | -0.217 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 161.72 | 0.595 | 2.91 | -- | 0.276 | -- | -- | -- | -0.00352 | 5.37 | -- | -- | -- | -- |
| 139.36 | 0.55 | 2.91 | -- | -- | 5.14 | -- | -- | 0.0166 | -- | 18.96 | 162 | 6.36 | 0.746 |
| 165.69 | 0.601 | 2.91 | -- | -- | -- | -- | -- | 0.00227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.78 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 1 |
| 4 | 135.78 | temperature | 20 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 13 | 137.98 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 3 |
| 16 | 138.59 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 28 | 140.49 | wind | 1 | 10 | < th | dose independent | rect. | 12 | 1 |
| 30 | 140.49 | wind | 1 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 36 | 140.65 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 53 | 142.89 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 1 |
| 55 | 143.13 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 1 |
| 69 | 144.13 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 3 |
| 75 | 144.67 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 76 | 144.67 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 3 |
| 147 | 147.15 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 184 | 149.48 | humidity | 90 | 90 | > th | dose independent | rect. | 7 | 2 |
| 218 | 149.67 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 6 | 2 |
| 223 | 149.72 | humidity | 90 | 10 | > th | dose independent | rect. | 6 | 2 |
| 235 | 149.80 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 6 | 1 |
| 316 | 150.34 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 8 | 4 |
| 337 | 150.88 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 355 | 150.93 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 477 | 151.82 | temperature | 30 | 90 | > th | dose dependent | sin | 9 | NA |
| 486 | 151.92 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 655 | 152.85 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 657 | 152.87 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 2 |
| 660 | 152.90 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 685 | 153.13 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 727 | 153.44 | wind | 1 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 805 | 153.75 | wind | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 818 | 153.81 | wind | 1 | 720 | < th | dose independent | rect. | 16 | 1 |
| 827 | 153.85 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 865 | 153.99 | wind | 9 | 270 | < th | dose independent | rect. | 6 | 23 |
| 919 | 154.13 | wind | 1 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 937 | 154.20 | wind | 1 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 946 | 154.22 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 954 | 154.24 | temperature | 30 | 270 | < th | dose independent | sin | 9 | NA |