Os06g0634700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0634700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.66 | 0.334 | 10.2 | -0.363 | 1.42 | 0.759 | -0.797 | 0.841 | 0.0773 | 19.2 | 8.34 | 3 | -- | -- |
| 54.26 | 0.343 | 10.2 | -0.323 | 1.42 | 0.774 | -0.498 | -- | 0.1 | 19.1 | 8.53 | 4 | -- | -- |
| 51.94 | 0.336 | 10.2 | -0.352 | 1.41 | 0.77 | -- | 0.579 | 0.0748 | 19.2 | 8.476 | 3 | -- | -- |
| 53.95 | 0.342 | 10.2 | -0.364 | 1.4 | 0.79 | -- | -- | 0.0734 | 19.2 | 8.377 | 3 | -- | -- |
| 140.91 | 0.553 | 10.1 | -0.377 | -- | 1.16 | -- | 0.474 | 0.067 | -- | 6.9 | 2 | -- | -- |
| 64.34 | 0.376 | 10.2 | -0.35 | 1.93 | -- | 0.257 | -- | 0.0517 | 20.9 | -- | -- | -- | -- |
| 64.56 | 0.376 | 10.2 | -0.358 | 1.93 | -- | -- | -- | 0.0518 | 20.8 | -- | -- | -- | -- |
| 142.29 | 0.556 | 10.1 | -0.382 | -- | 1.16 | -- | -- | 0.0673 | -- | 6.904 | 2 | -- | -- |
| 57.44 | 0.353 | 10.1 | -- | 1.41 | 0.79 | -- | -- | 0.113 | 19.1 | 8.164 | 3 | -- | -- |
| 277.83 | 0.779 | 10.1 | -0.359 | -- | -- | -- | -- | 0.0377 | -- | -- | -- | -- | -- |
| 67.95 | 0.386 | 10.2 | -- | 1.94 | -- | -- | -- | 0.0917 | 20.8 | -- | -- | -- | -- |
| 146.13 | 0.563 | 10.1 | -- | -- | 1.16 | -- | -- | 0.11 | -- | 6.72 | 2 | -- | -- |
| 281.24 | 0.783 | 10.1 | -- | -- | -- | -- | -- | 0.0775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.18 | radiation | 10 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 2 | 51.58 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 51.66 | radiation | 10 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 51.68 | radiation | 10 | 10 | < th | dose dependent | no | NA | NA |
| 8 | 51.74 | radiation | 10 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 51.78 | radiation | 10 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 52.91 | radiation | 10 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 32 | 53.37 | radiation | 10 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 56 | 53.77 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 61 | 53.91 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 22 |
| 63 | 53.95 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 17 |
| 69 | 54.10 | radiation | 10 | 10 | < th | dose dependent | sin | 4 | NA |
| 73 | 54.17 | radiation | 10 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 84 | 54.27 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 88 | 54.30 | radiation | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 101 | 54.46 | radiation | 10 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 121 | 54.63 | radiation | 1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 138 | 54.81 | radiation | 1 | 30 | > th | dose independent | rect. | 17 | 23 |
| 180 | 55.19 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 183 | 55.21 | radiation | 1 | 30 | < th | dose independent | sin | 3 | NA |
| 204 | 55.32 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 20 |
| 215 | 55.39 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 11 |
| 268 | 55.66 | radiation | 1 | 30 | > th | dose independent | no | NA | NA |
| 269 | 55.66 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 14 |
| 329 | 55.69 | radiation | 1 | 30 | < th | dose independent | no | NA | NA |
| 330 | 55.69 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 21 |
| 337 | 55.69 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 338 | 55.69 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 340 | 55.71 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 19 |
| 350 | 55.72 | radiation | 1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 356 | 55.75 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 21 |
| 361 | 55.76 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 17 |
| 467 | 56.13 | radiation | 1 | 30 | > th | dose independent | rect. | 11 | 23 |
| 550 | 56.41 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 23 |
| 578 | 56.52 | radiation | 1 | 30 | < th | dose independent | rect. | 24 | 17 |
| 660 | 56.75 | radiation | 1 | 30 | > th | dose independent | rect. | 15 | 23 |
| 672 | 56.78 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 11 |
| 703 | 56.83 | radiation | 1 | 30 | < th | dose independent | rect. | 1 | 23 |
| 799 | 56.88 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 4 |
| 825 | 56.91 | radiation | 1 | 30 | < th | dose independent | rect. | 24 | 8 |
| 833 | 56.92 | wind | 1 | 270 | > th | dose independent | rect. | 7 | 11 |
| 870 | 56.95 | radiation | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 883 | 56.98 | wind | 1 | 90 | > th | dose independent | sin | 22 | NA |