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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0634500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0407) R2 : 0.468
β1 : -2.21 (0.153) R2dD : 0.267 R2D : 0.0921
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.31 (0.139) R2dE : 0.341 R2E : 0.196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.433 (0.0871) R2dN8 : 0.0388 R2N8 : -0.0089
σ : 0.762
deviance : 267.42
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.9
memory length : 948
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.29 0.746 5.1 -2.64 0.622 2.03 1.63 -2.67 -0.32 20.4 27.88 1200 -- --
253.09 0.741 5.04 -2.09 0.621 1.76 1.55 -- -0.257 20.3 27.7 1184 -- --
259.53 0.75 5.09 -2.65 0.625 2.06 -- -2.54 -0.302 19.8 27.87 1183 -- --
259.54 0.75 5.04 -2.15 0.608 1.85 -- -- -0.29 19.5 27.35 1158 -- --
267.4 0.762 5.09 -2.47 -- 2.44 -- -1.44 -0.48 -- 26.01 953 -- --
382.12 0.916 5.06 -1.57 0.771 -- 1.89 -- -0.329 21.6 -- -- -- --
395.07 0.931 5.06 -1.64 0.777 -- -- -- -0.33 21.2 -- -- -- --
267.42 0.762 5.06 -2.21 -- 2.31 -- -- -0.433 -- 25.9 948 -- --
369.64 0.895 4.94 -- 0.705 1.41 -- -- 0.153 20 30.82 1158 -- --
430 0.969 5.04 -1.63 -- -- -- -- -0.334 -- -- -- -- --
465.59 1.01 5.02 -- 0.778 -- -- -- -0.148 21 -- -- -- --
388.43 0.918 4.99 -- -- 1.87 -- -- -0.108 -- 26.83 946 -- --
500.38 1.04 5 -- -- -- -- -- -0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.68 temperature 30 1440 > th dose dependent sin 15 NA
4 261.86 temperature 30 1440 > th dose dependent rect. 13 6
121 263.24 temperature 30 1440 > th dose dependent no NA NA
251 263.69 temperature 25 720 > th dose dependent rect. 17 17
284 264.85 temperature 30 1440 > th dose independent sin 13 NA
287 265.04 temperature 30 1440 > th dose independent rect. 15 4
305 265.17 temperature 30 1440 < th dose independent sin 12 NA
311 265.32 temperature 30 1440 < th dose independent rect. 14 22
319 265.52 temperature 30 1440 < th dose independent rect. 15 13
325 265.68 temperature 30 1440 < th dose independent rect. 15 10
327 265.70 temperature 30 1440 > th dose independent rect. 14 22
345 265.78 temperature 30 1440 < th dose independent rect. 15 17
347 265.80 temperature 30 1440 < th dose independent rect. 9 19
348 265.81 temperature 30 1440 > th dose independent rect. 15 20
357 265.87 temperature 30 1440 < th dose independent rect. 9 16
359 265.89 temperature 30 1440 < th dose independent rect. 15 4
363 265.91 temperature 30 1440 > th dose independent rect. 9 10
377 265.91 temperature 30 1440 < th dose independent rect. 9 23
395 265.95 temperature 30 1440 < th dose independent rect. 15 6
408 265.97 temperature 30 1440 < th dose independent rect. 9 10
418 266.00 temperature 30 1440 < th dose independent rect. 9 12
441 266.45 temperature 30 1440 < th dose independent rect. 17 23
451 266.63 temperature 30 1440 > th dose independent rect. 17 23
488 266.80 temperature 30 1440 < th dose independent rect. 7 21
503 266.87 temperature 30 1440 < th dose independent rect. 7 18
514 266.89 temperature 30 1440 < th dose independent rect. 22 21
525 266.91 temperature 30 1440 < th dose independent rect. 2 23
531 266.93 temperature 30 1440 < th dose independent no NA NA
550 266.96 temperature 30 1440 < th dose independent rect. 7 12
562 266.99 temperature 30 1440 < th dose independent rect. 7 14
571 267.00 temperature 30 1440 < th dose independent rect. 2 17
620 267.13 temperature 30 1440 < th dose independent rect. 17 19
623 267.15 temperature 30 1440 > th dose independent no NA NA
753 267.42 temperature 30 1440 > th dose independent rect. 17 19
902 268.56 temperature 30 1440 < th dose independent rect. 9 7
935 268.80 temperature 30 1440 > th dose independent rect. 9 7