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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0634000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0206) R2 : 0.0086
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0861 (0.0433) R2dN8 : 0.0111 R2N8 : 0.0086
σ : 0.387
deviance : 68.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.22 0.385 2.9 0.0928 0.148 -0.172 -0.554 0.826 0.121 13.4 10.71 251 -- --
68.47 0.385 2.91 0.0608 0.0647 -0.0945 -0.136 -- 0.112 12.4 18.84 283 -- --
67.83 0.384 2.91 0.102 0.101 -0.123 -- 0.455 0.111 13.8 10.01 250 -- --
68.18 0.385 2.91 0.0731 0.107 -0.144 -- -- 0.113 13.7 14.18 252 -- --
68.21 0.385 2.91 0.0562 -- -0.0642 -- 0.417 0.11 -- 14.48 252 -- --
68.67 0.388 2.92 0.0315 0.000735 -- -0.232 -- 0.0885 5.88 -- -- -- --
68.8 0.388 2.92 0.0301 0.0104 -- -- -- 0.0895 12.1 -- -- -- --
68.57 0.386 2.92 0.0337 -- -0.0689 -- -- 0.0961 -- 19.03 283 -- --
68.21 0.385 2.91 -- 0.109 -0.139 -- -- 0.102 14.2 14.18 252 -- --
68.8 0.388 2.92 0.0297 -- -- -- -- 0.0894 -- -- -- -- --
68.82 0.388 2.92 -- 0.00999 -- -- -- 0.0862 11.9 -- -- -- --
68.6 0.386 2.92 -- -- -0.067 -- -- 0.0923 -- 19.03 283 -- --
68.83 0.387 2.92 -- -- -- -- -- 0.0861 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.63 temperature 20.0 90 < th dose independent rect. 6 2
5 59.64 temperature 20.0 30 < th dose dependent rect. 7 1
13 60.46 radiation 1.0 30 < th dose dependent rect. 7 1
26 60.93 humidity 70.0 4320 > th dose independent rect. 21 1
27 60.93 radiation 10.0 1440 < th dose dependent rect. 21 1
28 60.94 wind 9.0 30 < th dose independent rect. 21 23
32 60.96 temperature 10.0 1440 > th dose independent rect. 21 1
35 60.96 temperature 30.0 1440 < th dose independent rect. 21 1
39 60.96 humidity 50.0 1440 > th dose independent rect. 21 1
45 60.96 atmosphere 995.0 1440 > th dose independent rect. 21 1
46 60.96 radiation 1.0 1440 < th dose independent rect. 21 1
66 60.96 temperature 10.0 1440 > th dose independent rect. 22 23
69 61.02 temperature 25.0 30 > th dose independent rect. 20 1
70 61.05 atmosphere 1005.0 30 > th dose dependent rect. 20 1
72 61.08 temperature 20.0 30 > th dose dependent rect. 20 1
73 61.09 wind 3.0 30 > th dose independent rect. 20 1
74 61.09 humidity 90.0 30 < th dose independent rect. 20 1
76 61.10 humidity 80.0 30 > th dose independent rect. 20 1
78 61.11 atmosphere 1005.0 30 > th dose independent rect. 20 1
85 61.14 wind 1.0 30 > th dose dependent rect. 20 1
86 61.15 wind 5.0 30 < th dose independent rect. 20 1
96 61.17 temperature 10.0 30 > th dose independent rect. 20 1
98 61.17 temperature 30.0 30 < th dose independent rect. 20 1
99 61.17 humidity 50.0 30 > th dose independent rect. 20 1
103 61.17 atmosphere 1010.0 30 < th dose independent rect. 20 1
105 61.17 radiation 1.0 30 < th dose independent rect. 20 1
110 61.17 precipitation 0.1 30 < th dose independent rect. 20 1
111 61.17 temperature 10.0 30 > th dose independent rect. 21 23
112 61.17 radiation 1.0 30 < th dose dependent rect. 20 1
118 61.17 precipitation 0.1 30 < th dose dependent rect. 20 1
119 61.18 humidity 50.0 30 > th dose dependent rect. 20 1
121 61.19 wind 9.0 30 < th dose dependent rect. 20 1
128 61.25 humidity 90.0 30 < th dose dependent rect. 20 1
130 61.29 wind 9.0 1440 < th dose independent rect. 21 1
134 61.34 atmosphere 1015.0 30 < th dose dependent rect. 20 1
135 61.39 temperature 30.0 30 < th dose dependent rect. 20 1
199 62.29 humidity 90.0 30 > th dose dependent rect. 7 1
200 62.29 humidity 90.0 30 > th dose dependent rect. 7 3
214 62.52 precipitation 0.1 30 < th dose independent rect. 21 23
215 62.52 precipitation 0.1 30 < th dose dependent rect. 21 23
219 62.71 radiation 1.0 90 < th dose independent rect. 6 1
220 62.77 atmosphere 995.0 30 > th dose independent rect. 21 23
224 62.80 radiation 1.0 90 < th dose independent rect. 6 3
226 62.81 radiation 1.0 90 < th dose independent rect. 6 5
262 63.34 humidity 90.0 30 > th dose dependent rect. 7 9
317 63.88 precipitation 0.1 1440 < th dose independent rect. 21 1
318 63.88 precipitation 0.1 1440 < th dose dependent rect. 21 1
331 63.98 atmosphere 1015.0 30 < th dose independent rect. 21 23
346 64.17 humidity 90.0 10 > th dose independent rect. 7 3
349 64.18 humidity 90.0 10 > th dose independent rect. 7 1
359 64.22 humidity 50.0 30 > th dose independent rect. 21 23
374 64.29 atmosphere 1005.0 90 < th dose independent rect. 6 3
383 64.33 atmosphere 1005.0 10 < th dose independent rect. 7 1
491 65.06 radiation 10.0 10 < th dose dependent rect. 21 23
510 65.21 temperature 10.0 30 > th dose dependent rect. 21 23
516 65.27 humidity 80.0 30 > th dose independent rect. 7 14
530 65.41 atmosphere 1010.0 10 < th dose dependent rect. 8 1
541 65.50 atmosphere 1010.0 90 < th dose dependent rect. 7 1
563 65.58 atmosphere 1005.0 270 < th dose independent rect. 4 4
565 65.59 radiation 10.0 10 < th dose independent rect. 21 23
571 65.62 radiation 20.0 90 < th dose independent rect. 7 1
640 65.82 temperature 30.0 30 < th dose independent rect. 21 23
672 65.89 wind 1.0 30 > th dose independent rect. 21 23
700 65.94 wind 9.0 90 < th dose independent rect. 9 10
766 66.05 humidity 50.0 10 > th dose dependent rect. 20 14
776 66.07 radiation 40.0 90 < th dose dependent rect. 19 14
783 66.10 atmosphere 1000.0 90 > th dose independent rect. 19 14
802 66.13 radiation 40.0 30 < th dose dependent rect. 21 23
817 66.16 temperature 25.0 270 < th dose dependent rect. 3 5
840 66.19 humidity 90.0 270 > th dose dependent rect. 4 12
883 66.23 radiation 20.0 90 < th dose independent rect. 19 14
892 66.24 wind 5.0 30 < th dose independent rect. 21 10
893 66.24 precipitation 0.1 90 < th dose independent rect. 9 10
894 66.24 precipitation 0.1 90 < th dose dependent rect. 9 10
898 66.25 humidity 90.0 90 > th dose independent rect. 6 10
905 66.26 precipitation 0.1 1440 < th dose independent rect. 8 1
909 66.26 precipitation 0.1 1440 < th dose dependent rect. 8 1
919 66.27 wind 5.0 10 < th dose independent rect. 7 1
927 66.27 atmosphere 1000.0 90 > th dose independent rect. 9 10
936 66.27 atmosphere 995.0 30 > th dose dependent rect. 21 23
940 66.28 temperature 10.0 1440 > th dose independent rect. 22 10
943 66.28 temperature 30.0 1440 < th dose independent rect. 22 10
947 66.28 humidity 50.0 1440 > th dose independent rect. 22 10
952 66.28 atmosphere 995.0 1440 > th dose independent rect. 22 10
953 66.28 temperature 10.0 1440 > th dose independent rect. 8 14
961 66.28 wind 9.0 30 < th dose dependent rect. 21 10
965 66.29 wind 9.0 90 < th dose independent rect. 19 14
966 66.29 temperature 30.0 90 < th dose independent rect. 19 14
970 66.29 radiation 40.0 30 < th dose dependent rect. 21 10
977 66.30 temperature 10.0 90 > th dose independent rect. 9 10
979 66.30 atmosphere 1015.0 90 < th dose independent rect. 9 10
980 66.30 temperature 10.0 90 > th dose independent rect. 19 14
981 66.30 humidity 50.0 90 > th dose independent rect. 19 14