Os06g0630200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0630200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.94 | 0.293 | 2.82 | 0.0482 | 0.318 | 0.295 | -0.787 | -0.758 | 0.0349 | 14.8 | 0.9938 | 275 | -- | -- |
| 39.37 | 0.292 | 2.81 | 0.0368 | 0.174 | 0.172 | 0.00662 | -- | 0.049 | 15 | 0.07185 | 186 | -- | -- |
| 39.19 | 0.292 | 2.82 | 0.0232 | 0.373 | 0.338 | -- | -0.169 | 0.0333 | 14.7 | 0.9998 | 273 | -- | -- |
| 39.31 | 0.292 | 2.81 | 0.0277 | 0.182 | 0.188 | -- | -- | 0.0549 | 14.3 | 0.0199 | 153 | -- | -- |
| 39.92 | 0.296 | 2.83 | 0.00226 | -- | 0.0336 | -- | -0.138 | 0.0184 | -- | 0.9998 | 273 | -- | -- |
| 39.71 | 0.295 | 2.83 | -0.00744 | 0.0698 | -- | -0.222 | -- | 0.0175 | 21.1 | -- | -- | -- | -- |
| 39.87 | 0.296 | 2.83 | -2.29e-05 | 0.0703 | -- | -- | -- | 0.0175 | 21.6 | -- | -- | -- | -- |
| 39.96 | 0.296 | 2.83 | 0.00249 | -- | 0.0435 | -- | -- | 0.0201 | -- | 0.0199 | 153 | -- | -- |
| 39.31 | 0.292 | 2.81 | -- | 0.175 | 0.195 | -- | -- | 0.0481 | 14.2 | 3.449e-06 | 153 | -- | -- |
| 40.17 | 0.296 | 2.83 | 0.000547 | -- | -- | -- | -- | 0.0173 | -- | -- | -- | -- | -- |
| 39.87 | 0.295 | 2.83 | -- | 0.0703 | -- | -- | -- | 0.0175 | 21.6 | -- | -- | -- | -- |
| 39.8 | 0.294 | 2.83 | -- | -- | 0.0604 | -- | -- | 0.0263 | -- | 0.07998 | 157 | -- | -- |
| 40.17 | 0.296 | 2.83 | -- | -- | -- | -- | -- | 0.0173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.16 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 3 | 34.74 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 35.61 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 24 | 35.62 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 27 | 35.62 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 31 | 35.62 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 37 | 35.62 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 38 | 35.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 58 | 35.62 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 62 | 35.64 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 63 | 35.65 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 66 | 35.67 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 69 | 35.68 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 70 | 35.68 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 74 | 35.72 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 82 | 35.80 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 89 | 35.98 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 90 | 36.01 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 95 | 36.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 97 | 36.03 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 98 | 36.03 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 101 | 36.03 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 105 | 36.03 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 110 | 36.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 111 | 36.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 112 | 36.03 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 117 | 36.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 119 | 36.08 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 127 | 36.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 143 | 36.35 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 145 | 36.43 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 150 | 36.61 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 152 | 36.67 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 272 | 37.78 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 3 |
| 297 | 37.96 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 5 |
| 298 | 37.97 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 304 | 38.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 307 | 38.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 331 | 38.14 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 13 |
| 352 | 38.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 5 |
| 371 | 38.21 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 373 | 38.22 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 378 | 38.22 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 389 | 38.23 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 5 |
| 394 | 38.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 453 | 38.32 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 7 |
| 458 | 38.32 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 526 | 38.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 3 |
| 529 | 38.41 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 534 | 38.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 538 | 38.42 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 3 |
| 629 | 38.46 | radiation | 1.0 | 270 | > th | dose independent | sin | 22 | NA |
| 630 | 38.46 | radiation | 1.0 | 270 | < th | dose independent | sin | 22 | NA |
| 690 | 38.49 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 22 |
| 691 | 38.49 | radiation | 1.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 697 | 38.49 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 699 | 38.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 700 | 38.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 701 | 38.50 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 738 | 38.53 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 743 | 38.53 | humidity | 90.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 745 | 38.53 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 776 | 38.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 777 | 38.55 | wind | 1.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 833 | 38.58 | humidity | 90.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 834 | 38.58 | humidity | 80.0 | 30 | > th | dose independent | rect. | 19 | 13 |
| 841 | 38.58 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 19 | 14 |
| 842 | 38.58 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 897 | 38.60 | humidity | 90.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 914 | 38.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 4 |
| 979 | 38.64 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 4 |
| 988 | 38.64 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 2 |