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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0627500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0372) R2 : 0.369
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.653 (0.0955) R2dC : 0.0648 R2C : 0.0171
β3 : 1.23 (0.0996) R2dE : 0.219 R2E : 0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.797 (0.0789) R2dN8 : 0.188 R2N8 : 0.0934
σ : 0.696
deviance : 223.37
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_____
C
peak time of C : 7.64
E
wheather : temperature
threshold : 28.43
memory length : 1224
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
221.84 0.7 3.04 0.896 0.637 0.514 -0.291 6.4 0.897 7.64 30.34 1183 -- --
222.06 0.694 3.19 -0.212 0.652 1.26 -0.329 -- 0.775 7.57 28.3 1228 -- --
222.01 0.694 3.04 0.897 0.64 0.504 -- 6.5 0.894 7.61 30.5 1171 -- --
222.27 0.694 3.19 -0.21 0.656 1.27 -- -- 0.768 7.68 28.28 1234 -- --
243.54 0.727 3.05 0.939 -- 0.471 -- 6.54 0.909 -- 30.4 1232 -- --
296.13 0.807 3.22 0.153 0.658 -- -0.0953 -- 0.662 6.5 -- -- -- --
296.16 0.806 3.22 0.152 0.658 -- -- -- 0.662 6.47 -- -- -- --
244.43 0.728 3.2 -0.195 -- 1.24 -- -- 0.791 -- 28.45 1266 -- --
223.37 0.696 3.18 -- 0.653 1.23 -- -- 0.797 7.64 28.43 1224 -- --
318.64 0.834 3.23 0.168 -- -- -- -- 0.676 -- -- -- -- --
296.76 0.806 3.22 -- 0.66 -- -- -- 0.645 6.46 -- -- -- --
245.38 0.73 3.2 -- -- 1.21 -- -- 0.814 -- 28.5 1265 -- --
319.38 0.834 3.23 -- -- -- -- -- 0.657 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.50 temperature 30 14400 > th dose independent rect. 11 2
2 212.71 temperature 30 14400 < th dose independent rect. 11 2
5 213.78 temperature 30 14400 > th dose dependent rect. 14 5
21 213.93 temperature 30 14400 > th dose dependent rect. 14 2
25 214.10 temperature 30 14400 > th dose dependent sin 13 NA
78 214.45 temperature 30 14400 < th dose independent rect. 16 11
84 214.48 temperature 30 14400 < th dose independent rect. 16 13
85 214.48 temperature 30 14400 < th dose independent rect. 16 15
89 214.51 temperature 30 14400 < th dose independent rect. 15 22
91 214.53 temperature 30 14400 < th dose independent rect. 16 4
99 214.59 temperature 30 14400 > th dose independent rect. 16 3
117 214.67 temperature 30 14400 > th dose independent rect. 15 22
148 215.20 temperature 30 14400 > th dose independent rect. 10 9
166 215.24 temperature 30 14400 < th dose independent sin 12 NA
168 215.25 temperature 30 14400 < th dose independent rect. 10 16
170 215.25 temperature 30 14400 < th dose independent rect. 10 19
171 215.25 temperature 30 14400 < th dose independent rect. 10 21
177 215.27 temperature 30 14400 < th dose independent rect. 10 9
200 215.36 temperature 30 14400 > th dose independent sin 12 NA
295 215.59 temperature 30 14400 < th dose independent rect. 6 20
298 215.59 temperature 30 14400 < th dose independent rect. 4 23
300 215.60 temperature 30 14400 < th dose independent no NA NA
306 215.60 temperature 30 14400 < th dose independent rect. 23 20
308 215.60 temperature 30 14400 < th dose independent rect. 4 21
325 215.61 temperature 30 14400 < th dose independent rect. 6 13
331 215.61 temperature 30 14400 < th dose independent rect. 4 16
365 215.62 temperature 30 14400 < th dose independent rect. 2 17
388 215.64 temperature 30 14400 > th dose independent sin 18 NA
390 215.64 temperature 30 14400 > th dose independent no NA NA
515 215.74 temperature 30 14400 < th dose independent sin 20 NA
593 215.95 temperature 30 14400 > th dose dependent no NA NA
708 215.99 temperature 25 14400 > th dose dependent rect. 18 5
842 216.60 temperature 30 14400 < th dose independent rect. 23 15
852 216.62 temperature 30 14400 < th dose independent rect. 6 8
909 216.68 temperature 25 14400 > th dose dependent rect. 19 1
992 217.00 temperature 25 14400 > th dose dependent rect. 22 1