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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0626700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isopenicillin N synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0172) R2 : 0.00666
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0632 (0.0362) R2dN8 : 0.0086 R2N8 : 0.00666
σ : 0.324
deviance : 48.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46 0.316 2.6 -0.715 0.0548 47 -0.318 99.6 0.0842 2.68 15 90 -- --
47.37 0.323 3.01 0.111 0.0573 -0.211 -0.201 -- 0.0746 4.1 14.5 1880 -- --
46.3 0.317 2.59 -0.713 0.0619 46.9 -- 99.3 0.0925 4.59 15 88 -- --
46.3 0.317 3.01 0.158 0.059 -0.655 -- -- 0.0739 4.24 14.01 4511 -- --
46.53 0.318 2.59 -0.712 -- 46.9 -- 99.5 0.0888 -- 15 90 -- --
47.45 0.323 3.01 0.101 0.0556 -- -0.23 -- 0.0724 3.68 -- -- -- --
47.56 0.323 3.01 0.105 0.0643 -- -- -- 0.0736 5.5 -- -- -- --
46.49 0.318 3.01 0.155 -- -0.633 -- -- 0.087 -- 13.89 4471 -- --
46.84 0.319 3.01 -- 0.0688 -0.563 -- -- 0.0675 4.91 13.7 4289 -- --
47.77 0.323 3.01 0.107 -- -- -- -- 0.0751 -- -- -- -- --
47.85 0.324 3.01 -- 0.066 -- -- -- 0.0619 5.43 -- -- -- --
47.09 0.32 3.01 -- -- -0.554 -- -- 0.069 -- 13.53 4272 -- --
48.07 0.324 3.01 -- -- -- -- -- 0.0632 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.40 wind 3.0 30 < th dose dependent rect. 2 1
2 33.43 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 33.44 temperature 15.0 30 > th dose dependent rect. 2 1
9 33.51 wind 3.0 30 < th dose independent rect. 2 1
10 33.52 temperature 20.0 30 > th dose independent rect. 2 1
11 33.52 humidity 80.0 30 > th dose independent rect. 2 1
13 33.53 temperature 25.0 30 < th dose independent rect. 2 1
16 33.57 wind 9.0 30 < th dose independent rect. 2 1
17 33.57 temperature 10.0 30 > th dose independent rect. 2 1
20 33.57 humidity 50.0 30 > th dose independent rect. 2 1
23 33.57 atmosphere 995.0 30 > th dose independent rect. 2 1
24 33.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 33.57 radiation 1.0 30 < th dose independent rect. 2 1
31 33.57 precipitation 0.1 30 < th dose independent rect. 2 1
32 33.57 temperature 10.0 30 > th dose independent rect. 3 23
33 33.57 humidity 50.0 30 > th dose dependent rect. 2 1
35 33.57 radiation 1.0 30 < th dose dependent rect. 2 1
40 33.57 precipitation 0.1 30 < th dose dependent rect. 2 1
44 33.60 atmosphere 1005.0 30 > th dose independent rect. 2 1
48 33.89 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 34.12 temperature 30.0 30 < th dose dependent rect. 2 1
58 35.04 wind 1.0 30 > th dose independent rect. 2 1
100 36.23 wind 9.0 30 < th dose independent rect. 3 23
111 41.69 atmosphere 995.0 30 > th dose independent rect. 3 23
117 42.41 precipitation 0.1 30 < th dose independent rect. 3 23
118 42.41 precipitation 0.1 30 < th dose dependent rect. 3 23
119 42.58 atmosphere 1015.0 1440 < th dose independent rect. 3 1
123 43.08 temperature 15.0 1440 > th dose independent rect. 3 1
134 43.56 humidity 50.0 43200 > th dose independent rect. 3 1
135 43.72 temperature 10.0 1440 > th dose independent rect. 21 1
138 43.72 temperature 30.0 1440 < th dose independent rect. 21 1
142 43.72 humidity 50.0 1440 > th dose independent rect. 21 1
148 43.72 atmosphere 995.0 1440 > th dose independent rect. 21 1
149 43.72 radiation 1.0 1440 < th dose independent rect. 21 1
169 43.72 temperature 10.0 1440 > th dose independent rect. 22 23
172 43.72 radiation 20.0 1440 < th dose dependent rect. 21 1
176 43.78 atmosphere 1015.0 30 < th dose independent rect. 3 23
178 43.79 temperature 25.0 30 > th dose independent rect. 20 1
179 43.81 atmosphere 1005.0 30 > th dose dependent rect. 20 1
182 43.84 wind 3.0 30 > th dose independent rect. 20 1
183 43.85 humidity 80.0 30 > th dose independent rect. 20 1
184 43.85 temperature 20.0 30 > th dose dependent rect. 20 1
193 43.90 humidity 90.0 30 < th dose independent rect. 20 1
194 43.90 atmosphere 1005.0 30 > th dose independent rect. 20 1
199 43.93 wind 1.0 30 > th dose dependent rect. 20 1
200 43.94 wind 5.0 30 < th dose independent rect. 20 1
206 43.96 temperature 10.0 30 > th dose independent rect. 20 1
208 43.96 temperature 30.0 30 < th dose independent rect. 20 1
209 43.96 humidity 50.0 30 > th dose independent rect. 20 1
213 43.96 atmosphere 1010.0 30 < th dose independent rect. 20 1
215 43.96 radiation 1.0 30 < th dose independent rect. 20 1
220 43.96 precipitation 0.1 30 < th dose independent rect. 20 1
221 43.96 temperature 10.0 30 > th dose independent rect. 21 23
223 43.96 humidity 50.0 30 > th dose dependent rect. 20 1
225 43.96 radiation 1.0 30 < th dose dependent rect. 20 1
231 43.96 precipitation 0.1 30 < th dose dependent rect. 20 1
233 43.97 wind 9.0 1440 < th dose independent rect. 3 1
237 43.97 temperature 30.0 1440 < th dose independent rect. 3 1
241 43.97 humidity 50.0 1440 > th dose independent rect. 3 1
250 43.97 atmosphere 995.0 1440 > th dose independent rect. 3 1
251 43.97 radiation 1.0 1440 < th dose independent rect. 3 1
271 43.97 temperature 10.0 1440 > th dose independent rect. 4 23
275 43.97 radiation 1.0 1440 < th dose dependent rect. 3 1
293 44.00 wind 9.0 30 < th dose dependent rect. 20 1
299 44.06 wind 9.0 30 < th dose dependent rect. 3 23
300 44.07 wind 9.0 1440 < th dose independent rect. 21 1
301 44.07 wind 1.0 30 > th dose dependent rect. 2 1
308 44.15 humidity 90.0 30 < th dose dependent rect. 20 1
309 44.15 temperature 10.0 30 > th dose dependent rect. 3 23
311 44.17 atmosphere 1015.0 30 < th dose dependent rect. 20 1
317 44.29 temperature 30.0 30 < th dose dependent rect. 20 1
324 44.32 humidity 90.0 90 < th dose independent rect. 2 1
346 44.50 humidity 50.0 30 > th dose independent rect. 3 23
347 44.52 radiation 20.0 10 < th dose dependent rect. 3 23
392 44.71 temperature 10.0 90 > th dose dependent rect. 3 16
393 44.72 wind 9.0 30 < th dose independent rect. 21 23
400 44.75 radiation 10.0 10 < th dose independent rect. 3 23
402 44.76 temperature 15.0 720 > th dose independent rect. 3 8
442 44.85 temperature 15.0 10 > th dose dependent rect. 5 15
451 44.89 wind 7.0 90 < th dose independent rect. 3 16
466 44.98 temperature 15.0 270 > th dose independent rect. 3 14
469 44.99 atmosphere 1015.0 720 < th dose independent rect. 3 8
472 45.02 temperature 15.0 720 > th dose independent rect. 3 16
475 45.03 temperature 15.0 720 > th dose independent rect. 7 8
480 45.05 radiation 40.0 30 < th dose independent rect. 11 16
485 45.06 temperature 15.0 90 > th dose independent rect. 3 16
486 45.06 temperature 15.0 720 > th dose independent rect. 23 16
491 45.08 temperature 15.0 720 > th dose independent rect. 3 6
519 45.19 wind 7.0 270 < th dose independent rect. 3 14
528 45.21 wind 7.0 90 < th dose independent rect. 5 14
530 45.22 temperature 15.0 90 > th dose independent rect. 5 14
532 45.22 temperature 15.0 720 > th dose independent rect. 15 16
538 45.23 wind 1.0 10 > th dose independent rect. 12 23
548 45.27 wind 1.0 10 > th dose independent rect. 21 23
559 45.29 temperature 10.0 720 > th dose dependent rect. 3 6
570 45.32 wind 1.0 10 < th dose independent rect. 14 13
571 45.32 atmosphere 1015.0 720 < th dose independent rect. 23 16
572 45.33 wind 1.0 10 < th dose independent rect. 17 10
576 45.33 temperature 30.0 14400 > th dose dependent rect. 17 1
597 45.34 temperature 15.0 1440 > th dose independent rect. 21 7
600 45.34 wind 7.0 10 < th dose independent rect. 5 15
603 45.35 temperature 25.0 720 > th dose dependent rect. 6 2
606 45.36 temperature 30.0 14400 > th dose independent rect. 17 1
607 45.36 precipitation 0.1 720 < th dose independent rect. 23 16
608 45.36 temperature 15.0 720 > th dose independent rect. 21 18
610 45.36 radiation 1.0 720 < th dose dependent rect. 24 13
612 45.36 precipitation 0.1 720 < th dose dependent rect. 23 16
613 45.37 temperature 15.0 720 > th dose independent rect. 3 12
614 45.37 temperature 30.0 14400 > th dose independent rect. 16 17
615 45.37 temperature 30.0 14400 < th dose independent rect. 16 17
622 45.38 temperature 30.0 14400 < th dose independent rect. 17 1
625 45.38 temperature 30.0 14400 < th dose independent rect. 16 3
653 45.38 temperature 25.0 30 > th dose independent rect. 24 20
685 45.40 temperature 15.0 4320 > th dose independent rect. 12 1
699 45.41 atmosphere 1015.0 720 < th dose independent rect. 3 6
702 45.41 humidity 80.0 4320 < th dose dependent rect. 1 1
725 45.45 temperature 30.0 14400 > th dose independent sin 12 NA
738 45.45 temperature 15.0 30 > th dose dependent rect. 20 7
752 45.46 temperature 30.0 14400 < th dose independent sin 11 NA
811 45.47 temperature 30.0 14400 > th dose dependent sin 12 NA
812 45.47 wind 3.0 10 > th dose dependent rect. 10 2
840 45.47 temperature 10.0 30 > th dose dependent rect. 21 23
842 45.48 radiation 1.0 720 < th dose independent rect. 24 13
843 45.48 wind 1.0 10 > th dose independent rect. 16 15
895 45.51 temperature 15.0 4320 > th dose independent rect. 12 5
907 45.52 temperature 15.0 720 > th dose independent rect. 11 16
908 45.52 atmosphere 1015.0 720 < th dose independent rect. 3 16
910 45.52 wind 1.0 10 > th dose independent rect. 16 19
921 45.53 temperature 25.0 720 > th dose independent rect. 6 2
941 45.53 wind 9.0 90 < th dose dependent rect. 3 16
962 45.55 precipitation 0.1 720 < th dose independent rect. 3 8
968 45.55 atmosphere 995.0 30 > th dose independent rect. 21 23
972 45.55 precipitation 0.1 720 < th dose dependent rect. 3 8