Os06g0625800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os06g0625800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.06 | 0.46 | 3.2 | 0.121 | 0.394 | 0.949 | -0.229 | 0.306 | 0.0608 | 18.5 | 27.4 | 79 | -- | -- |
| 96.2 | 0.457 | 3.19 | 0.171 | 0.393 | 0.938 | -0.272 | -- | 0.0735 | 18.4 | 27.45 | 79 | -- | -- |
| 96.18 | 0.457 | 3.2 | 0.118 | 0.395 | 0.955 | -- | 0.348 | 0.0588 | 18.4 | 27.43 | 79 | -- | -- |
| 96.38 | 0.457 | 3.19 | 0.175 | 0.392 | 0.94 | -- | -- | 0.0722 | 18.5 | 27.49 | 79 | -- | -- |
| 102.25 | 0.474 | 3.2 | 0.0991 | -- | 0.888 | -- | 0.274 | 0.016 | -- | 24.7 | 56 | -- | -- |
| 108.63 | 0.489 | 3.24 | -0.0623 | 0.336 | -- | -0.0699 | -- | -0.132 | 21.3 | -- | -- | -- | -- |
| 108.64 | 0.488 | 3.24 | -0.0599 | 0.336 | -- | -- | -- | -0.132 | 21.3 | -- | -- | -- | -- |
| 102.37 | 0.473 | 3.19 | 0.138 | -- | 0.866 | -- | -- | 0.0254 | -- | 24.75 | 50 | -- | -- |
| 97.11 | 0.459 | 3.2 | -- | 0.382 | 0.873 | -- | -- | 0.0367 | 18.6 | 27.47 | 70 | -- | -- |
| 115.22 | 0.502 | 3.23 | -0.0583 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 108.74 | 0.488 | 3.24 | -- | 0.336 | -- | -- | -- | -0.126 | 21.3 | -- | -- | -- | -- |
| 102.78 | 0.474 | 3.2 | -- | -- | 0.814 | -- | -- | 0.00971 | -- | 25.06 | 38 | -- | -- |
| 115.31 | 0.501 | 3.23 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 26 | 93.62 | wind | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 47 | 94.10 | wind | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 53 | 94.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 69 | 94.60 | temperature | 20 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 138 | 94.98 | wind | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 141 | 94.99 | temperature | 20 | 90 | < th | dose dependent | sin | 13 | NA |
| 142 | 94.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 143 | 94.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 211 | 95.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 276 | 95.50 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 304 | 95.60 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 305 | 95.61 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 318 | 95.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 333 | 95.71 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 342 | 95.72 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 348 | 95.75 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 382 | 95.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 400 | 95.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 404 | 95.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 416 | 96.02 | temperature | 20 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 424 | 96.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 460 | 96.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 558 | 96.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 568 | 96.41 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 590 | 96.44 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 596 | 96.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 599 | 96.47 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 634 | 96.54 | temperature | 30 | 270 | < th | dose dependent | sin | 15 | NA |
| 639 | 96.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 645 | 96.55 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 671 | 96.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 684 | 96.61 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 714 | 96.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 724 | 96.67 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 7 |
| 748 | 96.70 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 19 |
| 804 | 96.76 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 807 | 96.76 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 809 | 96.77 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 822 | 96.78 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 830 | 96.79 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 20 |
| 839 | 96.80 | temperature | 10 | 90 | > th | dose dependent | sin | 11 | NA |
| 850 | 96.81 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 870 | 96.82 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 872 | 96.82 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 881 | 96.83 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 882 | 96.83 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 883 | 96.84 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 996 | 96.93 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 22 | NA |