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Os06g0625300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidoglycan-binding LysM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.13 (0.0356) R2 : 0.804
β1 : 4.22 (0.128) R2dD : 0.485 R2D : 0.361
β2 : 1.13 (0.0826) R2dC : 0.0895 R2C : 0.0736
β3 : -1.87 (0.135) R2dE : 0.111 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.19 (0.0812) R2dN8 : 0.154 R2N8 : 0.12
σ : 0.652
deviance : 195.78
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C
peak time of C : 23.9
E
wheather : radiation
threshold : 1.748
memory length : 47520
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 10.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.49 0.65 9.08 5.94 1.2 -2.12 -0.639 -6.84 1.73 23.9 0.1716 4323 18 10.9
276.39 0.774 9.05 5.88 1.2 -2.13 -0.68 -- 1.74 23.7 3.029 4319 18 11
191.38 0.644 9.09 5.86 1.36 -2.21 -- -6.91 1.74 23.9 0.17 4340 18 10.9
195.78 0.652 9.13 4.22 1.13 -1.87 -- -- 1.19 23.9 1.748 47520 18.7 10.7
248.22 0.734 9.08 5.78 -- -2.25 -- -6.54 1.7 -- 0.05837 14208 18 11
285.4 0.792 9.01 4.28 1.23 -- -0.622 -- 1.68 0.091 -- -- -- --
287.07 0.793 9.01 4.31 1.23 -- -- -- 1.69 0.041 -- -- -- --
248.24 0.734 9.09 4.92 -- -2.13 -- -- 1.46 -- 2.98 18630 17.9 11.1
231.08 0.708 9.32 -- 1.15 -3.65 -- -- 0.286 0.098 0.0001934 47520 22.2 11.5
383.03 0.915 8.99 4.34 -- -- -- -- 1.7 -- -- -- -- --
775.81 1.3 9.12 -- 1.29 -- -- -- 1.21 0.229 -- -- -- --
284.75 0.786 9.32 -- -- -3.65 -- -- 0.275 -- 0.006377 47055 23.3 16
881.02 1.39 9.09 -- -- -- -- -- 1.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.90 humidity 90 14400 > th dose dependent rect. 2 5
8 175.59 wind 7 43200 > th dose independent rect. 18 1
16 177.99 humidity 90 14400 > th dose dependent rect. 1 14
44 181.16 humidity 90 14400 > th dose dependent rect. 2 1
50 181.32 wind 7 43200 < th dose independent rect. 18 1
71 183.38 humidity 90 14400 > th dose independent rect. 23 8
82 184.46 wind 7 43200 > th dose dependent rect. 18 1
83 184.49 humidity 90 14400 > th dose dependent sin 4 NA
84 184.57 humidity 90 14400 > th dose independent rect. 4 3
90 185.33 humidity 90 14400 > th dose independent rect. 23 5
91 185.35 humidity 90 14400 > th dose independent rect. 23 2
106 186.24 wind 9 43200 > th dose independent rect. 16 1
111 186.74 humidity 90 14400 < th dose independent rect. 23 2
125 187.97 humidity 90 14400 < th dose independent rect. 23 8
135 188.46 atmosphere 1010 43200 < th dose independent rect. 5 1
139 188.56 wind 9 43200 < th dose independent rect. 16 1
145 189.07 humidity 90 14400 < th dose independent rect. 23 5
151 189.16 atmosphere 1005 43200 > th dose dependent rect. 23 1
154 189.23 atmosphere 1000 43200 > th dose dependent rect. 3 1
163 189.57 atmosphere 1010 43200 > th dose independent rect. 5 1
167 189.59 atmosphere 1000 43200 > th dose dependent rect. 23 5
177 189.68 humidity 60 43200 > th dose independent rect. 21 12
179 189.71 atmosphere 1010 43200 < th dose independent rect. 23 1
192 189.79 atmosphere 1010 43200 < th dose independent rect. 19 1
194 189.79 humidity 90 14400 > th dose independent rect. 23 16
214 189.96 atmosphere 1010 43200 > th dose independent rect. 19 2
218 190.00 atmosphere 1010 43200 < th dose independent rect. 19 5
226 190.03 humidity 60 43200 < th dose independent rect. 20 13
230 190.06 atmosphere 1010 43200 < th dose independent rect. 19 12
243 190.11 atmosphere 1010 43200 < th dose independent rect. 17 14
248 190.13 atmosphere 1010 43200 > th dose independent rect. 3 4
249 190.13 atmosphere 1010 43200 < th dose independent rect. 17 7
262 190.17 atmosphere 1010 43200 < th dose independent rect. 22 9
271 190.19 wind 9 43200 > th dose independent rect. 16 3
291 190.25 atmosphere 1010 43200 < th dose independent rect. 9 22
299 190.27 atmosphere 1010 43200 > th dose independent rect. 17 4
323 190.31 atmosphere 1010 43200 < th dose independent sin 12 NA
335 190.32 atmosphere 1000 43200 > th dose dependent sin 9 NA
336 190.32 humidity 60 43200 > th dose dependent rect. 19 1
339 190.33 atmosphere 1010 43200 < th dose independent rect. 17 19
364 190.36 atmosphere 1010 43200 < th dose independent rect. 19 17
367 190.36 atmosphere 1010 43200 < th dose independent rect. 3 21
397 190.38 atmosphere 1010 43200 < th dose independent rect. 9 15
421 190.39 atmosphere 1010 43200 < th dose independent rect. 19 23
430 190.40 atmosphere 1010 43200 > th dose independent rect. 3 18
432 190.40 atmosphere 1010 43200 > th dose independent rect. 3 21
440 190.40 atmosphere 1010 43200 < th dose independent rect. 22 23
443 190.41 atmosphere 1010 43200 < th dose independent no NA NA
449 190.41 atmosphere 1010 43200 > th dose independent rect. 16 18
450 190.41 atmosphere 1010 43200 > th dose independent rect. 16 20
484 190.43 atmosphere 1010 43200 > th dose independent rect. 16 15
523 190.45 atmosphere 1010 43200 > th dose independent rect. 9 22
536 190.46 atmosphere 1010 43200 > th dose independent rect. 19 12
543 190.46 atmosphere 1010 43200 > th dose independent rect. 19 17
554 190.46 atmosphere 1010 43200 > th dose independent rect. 23 22
582 190.47 atmosphere 1010 43200 > th dose independent rect. 11 23
588 190.47 humidity 70 43200 < th dose dependent rect. 21 12
591 190.48 atmosphere 1010 43200 < th dose independent rect. 22 14
611 190.48 atmosphere 1010 43200 > th dose independent rect. 19 23
617 190.49 atmosphere 1010 43200 > th dose independent no NA NA
627 190.49 atmosphere 1010 43200 > th dose independent rect. 19 15
663 190.50 atmosphere 1010 43200 > th dose independent rect. 11 20
755 190.54 atmosphere 1010 43200 > th dose independent rect. 8 16
792 190.56 atmosphere 1010 43200 > th dose independent sin 8 NA
840 190.58 atmosphere 1010 43200 > th dose independent rect. 8 13
841 190.58 atmosphere 1010 43200 > th dose independent rect. 23 13
921 190.62 atmosphere 1010 43200 < th dose independent rect. 9 3
926 190.62 atmosphere 1010 43200 > th dose independent rect. 1 11
947 190.63 atmosphere 1010 43200 > th dose independent sin 19 NA
953 190.63 atmosphere 1010 43200 > th dose independent rect. 23 11