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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0625200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidoglycan-binding LysM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.028) R2 : 0.000419
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0258 (0.059) R2dN8 : 0.000541 R2N8 : 0.000419
σ : 0.527
deviance : 127.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.66 0.507 3.11 0.218 0.231 -0.104 -0.687 2.07 0.106 6.7 64.19 4237 -- --
122.85 0.52 3.12 0.125 0.252 -0.093 -0.666 -- 0.0406 6.57 57 5853 -- --
117.69 0.505 3.11 0.205 0.235 -0.105 -- 2.1 0.108 5.87 64.16 4236 -- --
123.66 0.521 3.12 0.115 0.263 -0.163 -- -- 0.0464 5.8 55.66 10173 -- --
120.56 0.511 3.11 0.217 -- -0.131 -- 2.12 0.122 -- 64.26 4236 -- --
123.07 0.52 3.12 0.128 0.238 -- -0.712 -- 0.0327 6.78 -- -- -- --
124.27 0.522 3.12 0.115 0.241 -- -- -- 0.0339 6.15 -- -- -- --
126.51 0.524 3.12 0.114 -- 0.208 -- -- 0.0669 -- 74 3534 -- --
123.63 0.518 3.13 -- 0.241 -0.201 -- -- 0.0222 6.15 50.32 9931 -- --
127.28 0.527 3.13 0.122 -- -- -- -- 0.0393 -- -- -- -- --
124.62 0.522 3.13 -- 0.243 -- -- -- 0.0211 6.13 -- -- -- --
126.65 0.524 3.13 -- -- -0.207 -- -- 0.021 -- 50.25 9931 -- --
127.67 0.527 3.13 -- -- -- -- -- 0.0258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.73 radiation 1 270 > th dose independent rect. 4 1
11 106.73 radiation 1 270 > th dose dependent rect. 4 1
21 114.06 humidity 90 90 < th dose independent rect. 2 6
23 114.72 humidity 90 90 < th dose independent rect. 6 2
24 114.78 humidity 90 10 < th dose independent rect. 7 1
27 114.92 atmosphere 1005 10 > th dose independent rect. 7 1
53 115.50 temperature 25 90 < th dose independent rect. 6 1
54 115.52 radiation 1 90 > th dose dependent rect. 6 1
55 115.63 wind 9 4320 > th dose independent rect. 14 1
58 115.66 wind 9 4320 < th dose independent rect. 14 1
59 115.75 wind 3 10 < th dose independent rect. 7 1
60 115.81 wind 9 4320 > th dose dependent rect. 14 1
61 115.91 radiation 10 10 > th dose independent rect. 6 1
87 115.91 radiation 10 10 > th dose dependent rect. 6 1
116 116.26 humidity 50 4320 > th dose independent rect. 16 1
122 116.55 humidity 80 10 > th dose independent rect. 8 1
125 116.74 radiation 10 720 < th dose independent rect. 22 8
136 116.81 humidity 70 4320 > th dose independent rect. 21 7
155 117.24 humidity 60 4320 > th dose independent rect. 13 1
163 117.32 humidity 70 4320 < th dose dependent rect. 15 6
186 117.41 humidity 70 4320 > th dose independent rect. 21 1
192 117.45 humidity 70 4320 < th dose dependent sin 13 NA
217 117.57 humidity 60 4320 > th dose independent rect. 13 7
239 117.59 humidity 60 4320 > th dose independent sin 14 NA
275 117.66 humidity 90 720 > th dose dependent rect. 18 8
311 117.74 radiation 10 720 < th dose dependent rect. 22 8
315 117.76 humidity 70 4320 < th dose independent sin 13 NA
331 117.76 atmosphere 1005 30 > th dose dependent rect. 2 6
334 117.78 humidity 70 4320 < th dose dependent rect. 16 1
336 117.79 humidity 70 4320 < th dose independent rect. 20 1
346 117.79 humidity 70 4320 < th dose independent rect. 15 16
348 117.79 humidity 70 4320 < th dose dependent rect. 20 1
380 117.83 humidity 70 4320 < th dose independent rect. 15 6
446 117.90 humidity 60 4320 > th dose independent rect. 17 23
527 117.97 atmosphere 1000 10 > th dose dependent rect. 7 1
528 117.97 wind 5 10 < th dose dependent rect. 6 2
536 117.98 humidity 50 10 > th dose independent rect. 8 23
543 117.99 humidity 60 4320 > th dose independent no NA NA
565 117.99 humidity 60 4320 > th dose independent rect. 1 18
615 117.99 humidity 70 4320 < th dose independent rect. 15 22
651 118.01 humidity 60 14400 < th dose independent rect. 15 2
652 118.01 humidity 70 4320 < th dose independent rect. 11 21
703 118.05 humidity 70 4320 < th dose independent rect. 11 10
722 118.06 humidity 60 4320 < th dose independent rect. 13 1
724 118.06 humidity 70 4320 < th dose independent rect. 11 2
744 118.07 humidity 60 4320 < th dose independent rect. 13 6
768 118.07 humidity 60 4320 > th dose independent rect. 15 23
826 118.09 humidity 70 4320 < th dose independent rect. 18 23
838 118.10 atmosphere 1005 30 > th dose independent rect. 2 6
854 118.11 humidity 90 720 > th dose dependent rect. 7 19
966 118.16 atmosphere 1010 10 > th dose dependent rect. 12 1