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Os06g0624200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.67 (0.0295) R2 : 0.827
β1 : 2.12 (0.111) R2dD : 0.16 R2D : 0.115
β2 : 1.7 (0.0803) R2dC : 0.209 R2C : 0.00957
β3 : -2.89 (0.142) R2dE : 0.238 R2E : 0.246
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.37 (0.0689) R2dN8 : 0.255 R2N8 : 0.295
σ : 0.538
deviance : 133.25
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C
peak time of C : 3.74
E
wheather : temperature
threshold : 26.56
memory length : 180
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.83 0.527 6.62 2.55 1.65 -3.07 1.44 -2.45 1.48 3.51 25.86 145 -- --
131.85 0.535 6.67 2.14 1.71 -2.88 0.7 -- 1.38 3.72 26.63 178 -- --
130.59 0.532 6.64 2.39 1.59 -2.98 -- -1.58 1.45 3.67 25.66 182 -- --
133.25 0.538 6.67 2.12 1.7 -2.89 -- -- 1.37 3.74 26.56 180 -- --
179.61 0.624 6.65 2.31 -- -3.03 -- -1.54 1.44 -- 27.35 1239 -- --
252.28 0.745 6.53 2.87 1.02 -- 0.568 -- 2.01 3.9 -- -- -- --
253.23 0.745 6.53 2.86 1.02 -- -- -- 2.01 3.91 -- -- -- --
180.81 0.626 6.68 2.01 -- -2.92 -- -- 1.37 -- 28 1239 -- --
238.08 0.719 6.76 -- 1.97 -3.77 -- -- 0.962 3.85 26.78 214 -- --
310.22 0.823 6.53 2.9 -- -- -- -- 2.03 -- -- -- -- --
469.04 1.01 6.6 -- 1.08 -- -- -- 1.69 3.88 -- -- -- --
236.34 0.716 6.78 -- -- -3.81 -- -- 0.964 -- 24.04 8170 -- --
532.6 1.08 6.61 -- -- -- -- -- 1.71 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.96 temperature 25 270 < th dose dependent rect. 8 23
7 127.38 temperature 25 90 < th dose dependent no NA NA
11 127.60 temperature 25 90 < th dose dependent rect. 15 23
12 127.73 temperature 25 90 < th dose dependent rect. 13 23
15 128.25 temperature 25 90 < th dose dependent rect. 21 23
16 128.30 temperature 25 90 < th dose dependent rect. 17 23
24 128.66 temperature 25 90 < th dose dependent rect. 1 23
25 129.00 temperature 25 90 < th dose dependent rect. 19 23
37 129.72 temperature 25 90 < th dose dependent rect. 3 23
52 130.57 temperature 25 30 < th dose dependent rect. 5 23
64 131.18 temperature 25 30 < th dose dependent rect. 23 23
110 133.10 temperature 25 1440 < th dose dependent rect. 21 2
175 135.79 temperature 10 1440 > th dose dependent rect. 21 3
179 135.88 temperature 10 1440 > th dose dependent rect. 22 1
209 136.62 temperature 20 1440 > th dose dependent rect. 20 10
213 136.71 temperature 25 1440 < th dose dependent rect. 17 13
226 136.89 temperature 25 1440 < th dose dependent sin 14 NA
299 137.82 temperature 25 720 < th dose dependent rect. 7 18
316 138.01 temperature 25 720 < th dose dependent rect. 5 19
319 138.04 temperature 10 1440 > th dose dependent rect. 19 11
323 138.11 temperature 25 1440 < th dose dependent rect. 17 19
442 138.90 temperature 25 1440 < th dose dependent rect. 10 21
604 140.07 temperature 25 1440 < th dose dependent no NA NA
613 140.13 temperature 25 1440 < th dose dependent rect. 2 23
667 140.52 temperature 10 1440 > th dose dependent sin 12 NA
786 141.48 temperature 20 1440 > th dose dependent rect. 4 2
886 142.25 temperature 30 270 < th dose dependent sin 11 NA
955 142.73 temperature 25 1440 < th dose dependent rect. 4 1
977 142.88 temperature 10 270 > th dose dependent sin 11 NA
980 142.90 temperature 10 1440 > th dose dependent rect. 4 1