Os06g0623600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
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Os06g0623600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.81 | 0.488 | 8.64 | 0.795 | 0.454 | 0.831 | 1.13 | -1.83 | 0.62 | 20.8 | 20 | 9 | -- | -- |
| 115.41 | 0.5 | 8.64 | 0.804 | 0.604 | 0.744 | -0.743 | -- | 0.627 | 21.7 | 30 | 8 | -- | -- |
| 109.51 | 0.487 | 8.64 | 0.791 | 0.523 | 0.856 | -- | -1.31 | 0.624 | 20.8 | 27.49 | 8 | -- | -- |
| 117.25 | 0.504 | 8.64 | 0.836 | 0.569 | 0.815 | -- | -- | 0.628 | 21.1 | 30 | 8 | -- | -- |
| 118.29 | 0.507 | 8.65 | 0.824 | -- | 1.02 | -- | -0.989 | 0.657 | -- | 20 | 8 | -- | -- |
| 127.11 | 0.529 | 8.65 | 0.773 | 1.18 | -- | -0.779 | -- | 0.617 | 22.8 | -- | -- | -- | -- |
| 129.63 | 0.533 | 8.65 | 0.805 | 1.19 | -- | -- | -- | 0.62 | 22.8 | -- | -- | -- | -- |
| 124.47 | 0.52 | 8.62 | 0.819 | -- | 1.03 | -- | -- | 0.62 | -- | 17.36 | 5 | -- | -- |
| 135.68 | 0.543 | 8.66 | -- | 0.563 | 0.808 | -- | -- | 0.547 | 21.1 | 30 | 8 | -- | -- |
| 216.58 | 0.688 | 8.62 | 0.829 | -- | -- | -- | -- | 0.627 | -- | -- | -- | -- | -- |
| 146.71 | 0.567 | 8.67 | -- | 1.19 | -- | -- | -- | 0.531 | 22.8 | -- | -- | -- | -- |
| 142 | 0.555 | 8.64 | -- | -- | 1.03 | -- | -- | 0.53 | -- | 16.79 | 4 | -- | -- |
| 234.71 | 0.715 | 8.64 | -- | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.73 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 4 | 103.97 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 6 | 104.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 10 | 104.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 15 | 105.17 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 18 | 105.24 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 15 |
| 19 | 105.35 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 25 | 105.59 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 29 | 105.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 38 | 106.14 | radiation | 10.0 | 270 | > th | dose independent | rect. | 11 | 1 |
| 42 | 106.23 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 45 | 106.35 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 49 | 106.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 51 | 106.46 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 57 | 106.54 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 58 | 106.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 60 | 106.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 61 | 106.59 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 66 | 106.70 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 67 | 106.71 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 17 |
| 68 | 106.72 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 69 | 106.72 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 71 | 106.72 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 8 |
| 73 | 106.77 | radiation | 20.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 78 | 106.79 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 80 | 106.80 | radiation | 10.0 | 10 | > th | dose independent | rect. | 11 | 6 |
| 83 | 106.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 87 | 106.88 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 102 | 106.91 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 128 | 107.14 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 132 | 107.16 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 136 | 107.19 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 145 | 107.22 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 13 |
| 164 | 107.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 170 | 107.36 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 173 | 107.36 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 174 | 107.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 205 | 107.48 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 207 | 107.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 218 | 107.53 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 241 | 107.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 243 | 107.59 | temperature | 20.0 | 720 | < th | dose independent | sin | 5 | NA |
| 253 | 107.62 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 254 | 107.62 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 262 | 107.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 263 | 107.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 271 | 107.68 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 278 | 107.71 | radiation | 20.0 | 30 | < th | dose independent | rect. | 1 | 21 |
| 286 | 107.76 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 287 | 107.76 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 19 |
| 292 | 107.78 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 300 | 107.81 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 310 | 107.84 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 379 | 108.03 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 8 |
| 391 | 108.03 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 392 | 108.04 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 16 |
| 405 | 108.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 406 | 108.08 | radiation | 10.0 | 10 | < th | dose independent | sin | 21 | NA |
| 422 | 108.12 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 434 | 108.15 | wind | 9.0 | 30 | < th | dose dependent | rect. | 11 | 16 |
| 445 | 108.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 451 | 108.19 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 453 | 108.20 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 501 | 108.29 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 2 |
| 528 | 108.32 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 531 | 108.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 534 | 108.33 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 535 | 108.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 538 | 108.33 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 552 | 108.37 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 555 | 108.37 | radiation | 1.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 556 | 108.37 | radiation | 20.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 579 | 108.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 584 | 108.43 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 586 | 108.43 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 601 | 108.45 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 637 | 108.52 | radiation | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 668 | 108.56 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 692 | 108.59 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 706 | 108.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 726 | 108.63 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 753 | 108.67 | radiation | 40.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 760 | 108.68 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 770 | 108.71 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 777 | 108.73 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 8 |
| 779 | 108.73 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 800 | 108.76 | temperature | 20.0 | 720 | > th | dose independent | sin | 4 | NA |
| 801 | 108.76 | radiation | 10.0 | 10 | > th | dose independent | sin | 21 | NA |
| 802 | 108.76 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 803 | 108.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 8 |
| 805 | 108.76 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 8 |
| 806 | 108.76 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 8 |
| 807 | 108.76 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 808 | 108.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 16 |
| 819 | 108.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 820 | 108.78 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 830 | 108.80 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 841 | 108.81 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 845 | 108.82 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 857 | 108.84 | wind | 5.0 | 270 | < th | dose independent | rect. | 10 | 15 |
| 863 | 108.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 14 |
| 864 | 108.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 16 |
| 868 | 108.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 16 |
| 869 | 108.86 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 8 |
| 873 | 108.86 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 8 |
| 876 | 108.87 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 884 | 108.90 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 14 |
| 939 | 108.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 953 | 108.99 | wind | 5.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 962 | 109.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 986 | 109.05 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |