Os06g0623200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0623200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.18 | 0.305 | 3.05 | 0.396 | 0.0786 | -5.47 | 0.057 | 57.4 | 0.00751 | 7.8 | 34.62 | 59 | -- | -- |
| 41.91 | 0.304 | 3.09 | 0.126 | 0.0748 | 3.06 | 0.051 | -- | 0.00675 | 7.94 | 34.62 | 59 | -- | -- |
| 41.91 | 0.302 | 3.06 | 0.356 | 0.0766 | -5.47 | -- | 58 | 0.00666 | 7.61 | 34.87 | 63 | -- | -- |
| 41.92 | 0.304 | 3.09 | 0.127 | 0.0754 | 3.06 | -- | -- | 0.00658 | 7.67 | 34.87 | 63 | -- | -- |
| 42.21 | 0.303 | 3.06 | 0.349 | -- | -5.52 | -- | 58.1 | 0.00582 | -- | 34.88 | 60 | -- | -- |
| 51.15 | 0.335 | 3.09 | 0.14 | 0.0715 | -- | 0.119 | -- | 0.000621 | 9.77 | -- | -- | -- | -- |
| 51.2 | 0.335 | 3.09 | 0.144 | 0.0737 | -- | -- | -- | 0.000442 | 9 | -- | -- | -- | -- |
| 42.22 | 0.304 | 3.09 | 0.128 | -- | 3.05 | -- | -- | 0.00768 | -- | 34.87 | 63 | -- | -- |
| 42.34 | 0.305 | 3.09 | -- | 0.0765 | 3.08 | -- | -- | -0.00749 | 7.55 | 34.87 | 63 | -- | -- |
| 51.51 | 0.335 | 3.09 | 0.144 | -- | -- | -- | -- | 0.000905 | -- | -- | -- | -- | -- |
| 51.74 | 0.336 | 3.09 | -- | 0.074 | -- | -- | -- | -0.0156 | 8.85 | -- | -- | -- | -- |
| 42.66 | 0.305 | 3.09 | -- | -- | 3.07 | -- | -- | -0.00645 | -- | 34.87 | 63 | -- | -- |
| 52.05 | 0.337 | 3.09 | -- | -- | -- | -- | -- | -0.0151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.90 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 2 | 41.90 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 2 |
| 3 | 41.90 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 6 | 41.91 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 23 | 43.23 | wind | 3 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 29 | 44.71 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 1 |
| 30 | 45.05 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 56 | 45.63 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 4 |
| 86 | 46.22 | wind | 3 | 90 | < th | dose dependent | rect. | 12 | 5 |
| 114 | 46.45 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 8 |
| 164 | 46.76 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 174 | 46.78 | wind | 1 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 225 | 46.92 | radiation | 40 | 30 | < th | dose independent | rect. | 13 | 1 |
| 248 | 46.98 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 265 | 47.01 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 340 | 47.14 | radiation | 20 | 30 | > th | dose independent | rect. | 13 | 1 |
| 353 | 47.16 | wind | 1 | 90 | < th | dose independent | rect. | 9 | 7 |
| 383 | 47.19 | wind | 1 | 30 | < th | dose dependent | rect. | 8 | 6 |
| 416 | 47.24 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 452 | 47.33 | temperature | 30 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 467 | 47.33 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 472 | 47.35 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 10 |
| 537 | 47.42 | wind | 9 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 581 | 47.50 | radiation | 40 | 30 | < th | dose independent | rect. | 13 | 14 |
| 582 | 47.50 | radiation | 30 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 646 | 47.59 | temperature | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 751 | 47.68 | wind | 5 | 10 | < th | dose independent | rect. | 13 | 2 |
| 829 | 47.79 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 23 | NA |
| 852 | 47.85 | wind | 7 | 90 | < th | dose independent | rect. | 12 | 15 |
| 860 | 47.87 | humidity | 70 | 10 | < th | dose independent | rect. | 13 | 1 |
| 875 | 47.90 | humidity | 90 | 10 | < th | dose independent | rect. | 13 | 1 |
| 885 | 47.94 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 915 | 48.00 | wind | 1 | 10 | > th | dose independent | sin | 20 | NA |
| 921 | 48.01 | humidity | 50 | 10 | > th | dose independent | rect. | 13 | 1 |
| 930 | 48.02 | radiation | 40 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 932 | 48.03 | wind | 9 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 933 | 48.03 | temperature | 25 | 30 | > th | dose independent | rect. | 22 | 1 |
| 934 | 48.03 | temperature | 10 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 937 | 48.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 941 | 48.03 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 951 | 48.03 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 952 | 48.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 981 | 48.03 | wind | 9 | 30 | < th | dose independent | rect. | 3 | 10 |
| 982 | 48.03 | temperature | 10 | 30 | > th | dose independent | rect. | 3 | 10 |
| 984 | 48.03 | atmosphere | 995 | 30 | > th | dose independent | rect. | 3 | 10 |
| 985 | 48.03 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 3 | 10 |
| 990 | 48.03 | temperature | 10 | 30 | > th | dose independent | rect. | 13 | 14 |
| 998 | 48.03 | temperature | 10 | 1440 | > th | dose independent | rect. | 24 | 23 |