FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0622400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.042) R2 : 0.415
β1 : -2.39 (0.154) R2dD : 0.321 R2D : 0.221
β2 : 0.65 (0.103) R2dC : 0.0514 R2C : 0.0177
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.838 (0.0896) R2dN8 : 0.15 R2N8 : 0.0418
σ : 0.789
deviance : 283.85
__
_____
C
peak time of C : 9.44
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.46 0.746 4.54 -2.01 0.644 -0.843 -1.59 1.32 -0.895 9.63 10 8299 -- --
256.69 0.746 4.54 -1.99 0.635 -0.84 -1.58 -- -0.898 9.63 9.964 13060 -- --
264.9 0.758 4.54 -2.01 0.73 -0.843 -- 1.32 -0.895 9.51 10 8837 -- --
265.86 0.759 4.54 -2.04 0.648 -0.84 -- -- -0.897 9.46 9.98 13060 -- --
286.82 0.789 4.54 -2.01 -- -0.843 -- 1.32 -0.898 -- 9.981 8879 -- --
274.31 0.776 4.55 -2.32 0.64 -- -1.6 -- -0.835 9.6 -- -- -- --
283.85 0.789 4.55 -2.39 0.65 -- -- -- -0.838 9.44 -- -- -- --
289.71 0.793 4.54 -1.88 -- -0.954 -- -- -0.913 -- 9.989 8836 -- --
344.96 0.865 4.51 -- 0.848 -1.35 -- -- -0.722 9.24 9.42 27092 -- --
308.63 0.821 4.57 -2.39 -- -- -- -- -0.836 -- -- -- -- --
433.85 0.974 4.49 -- 0.654 -- -- -- -0.572 9.72 -- -- -- --
355.46 0.878 4.49 -- -- -1.87 -- -- -0.508 -- 9.714 47520 -- --
459.27 1 4.51 -- -- -- -- -- -0.571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.36 wind 1.0 14400 < th dose independent rect. 22 2
2 249.35 wind 1.0 14400 > th dose independent rect. 22 2
3 249.59 wind 9.0 14400 > th dose dependent rect. 13 2
4 249.68 precipitation 0.1 43200 > th dose independent rect. 17 2
5 249.69 precipitation 0.1 43200 < th dose independent rect. 17 2
6 249.69 precipitation 0.1 43200 < th dose dependent rect. 17 2
7 249.98 wind 1.0 14400 < th dose dependent rect. 22 2
8 250.39 temperature 25.0 4320 > th dose dependent rect. 22 1
11 250.73 atmosphere 1005.0 43200 < th dose dependent rect. 16 1
14 250.96 temperature 25.0 4320 > th dose dependent rect. 21 3
22 251.44 humidity 80.0 14400 < th dose dependent rect. 19 12
23 251.47 temperature 25.0 4320 > th dose dependent rect. 20 11
29 251.59 wind 9.0 43200 > th dose dependent rect. 19 2
54 252.02 atmosphere 1005.0 43200 < th dose independent rect. 10 1
55 252.02 wind 9.0 43200 > th dose independent rect. 19 2
63 252.22 atmosphere 1000.0 90 > th dose independent rect. 5 22
72 252.39 radiation 40.0 4320 < th dose independent rect. 14 14
76 252.41 radiation 40.0 4320 < th dose independent rect. 14 10
77 252.42 radiation 40.0 4320 < th dose independent rect. 14 6
82 252.46 atmosphere 1005.0 43200 > th dose independent rect. 22 1
85 252.47 radiation 40.0 4320 < th dose independent rect. 14 3
99 252.56 radiation 40.0 4320 < th dose independent rect. 13 19
113 252.60 radiation 30.0 4320 > th dose dependent rect. 14 3
137 252.69 wind 9.0 14400 > th dose independent rect. 13 1
147 252.80 wind 1.0 43200 < th dose dependent rect. 19 2
150 252.83 temperature 25.0 720 > th dose dependent rect. 19 14
156 252.93 wind 1.0 43200 < th dose independent rect. 16 9
158 252.96 wind 1.0 43200 > th dose independent rect. 16 9
160 252.97 precipitation 0.1 43200 > th dose dependent rect. 14 5
168 253.08 wind 1.0 14400 > th dose independent rect. 18 6
169 253.09 humidity 80.0 14400 > th dose independent rect. 20 13
173 253.14 wind 1.0 43200 < th dose dependent rect. 13 11
196 253.38 radiation 40.0 4320 < th dose independent sin 14 NA
209 253.55 radiation 40.0 14400 > th dose dependent rect. 12 1
236 253.77 wind 1.0 43200 < th dose independent rect. 14 11
241 253.80 wind 9.0 43200 < th dose independent rect. 19 2
246 253.82 temperature 25.0 720 > th dose dependent rect. 21 11
260 253.89 atmosphere 1005.0 43200 < th dose dependent sin 18 NA
266 253.93 temperature 25.0 4320 > th dose independent rect. 20 11
280 254.00 humidity 80.0 14400 < th dose independent rect. 19 14
317 254.12 temperature 25.0 4320 > th dose independent rect. 22 9
328 254.16 atmosphere 1005.0 43200 < th dose dependent rect. 24 1
347 254.23 humidity 60.0 14400 < th dose independent rect. 18 1
354 254.26 atmosphere 1005.0 43200 < th dose independent rect. 22 1
364 254.30 humidity 80.0 14400 > th dose independent rect. 1 8
366 254.31 atmosphere 1005.0 43200 < th dose independent rect. 5 7
367 254.31 radiation 10.0 14400 < th dose independent rect. 13 18
383 254.37 radiation 10.0 4320 < th dose dependent rect. 7 1
385 254.38 atmosphere 1000.0 10 > th dose independent rect. 6 22
393 254.43 temperature 30.0 1440 < th dose independent rect. 10 1
411 254.47 wind 1.0 43200 > th dose independent rect. 14 11
414 254.48 humidity 80.0 14400 < th dose independent rect. 2 7
416 254.49 wind 9.0 14400 < th dose independent rect. 13 1
422 254.50 humidity 60.0 14400 < th dose dependent rect. 18 13
426 254.52 humidity 80.0 4320 > th dose independent rect. 8 2
427 254.52 radiation 20.0 4320 < th dose independent rect. 11 2
436 254.54 humidity 80.0 14400 < th dose dependent sin 10 NA
442 254.55 humidity 60.0 14400 < th dose dependent rect. 18 4
487 254.64 humidity 60.0 14400 < th dose dependent rect. 18 1
495 254.66 humidity 80.0 14400 < th dose independent rect. 23 10
500 254.67 temperature 20.0 720 > th dose dependent rect. 21 7
503 254.68 wind 5.0 43200 > th dose independent rect. 20 1
509 254.71 temperature 25.0 4320 > th dose independent rect. 17 14
524 254.75 temperature 30.0 1440 < th dose independent rect. 4 7
530 254.77 temperature 30.0 1440 > th dose independent rect. 10 1
552 254.84 temperature 25.0 1440 > th dose dependent rect. 1 7
567 254.87 radiation 10.0 4320 < th dose dependent rect. 18 16
568 254.88 temperature 30.0 1440 < th dose independent rect. 18 17
586 254.91 radiation 10.0 4320 < th dose dependent rect. 22 12
593 254.92 wind 1.0 14400 < th dose dependent rect. 18 6
599 254.92 atmosphere 1005.0 43200 < th dose dependent rect. 24 20
602 254.93 radiation 10.0 4320 < th dose dependent rect. 2 8
610 254.94 atmosphere 1005.0 43200 > th dose independent rect. 10 1
653 255.00 temperature 25.0 4320 < th dose independent rect. 5 2
654 255.00 radiation 10.0 14400 < th dose independent rect. 13 6
657 255.00 radiation 10.0 14400 < th dose independent rect. 13 10
666 255.01 radiation 40.0 14400 > th dose dependent rect. 12 21
667 255.02 radiation 10.0 14400 < th dose independent sin 13 NA
670 255.02 temperature 25.0 4320 > th dose independent rect. 5 2
684 255.04 atmosphere 1010.0 43200 < th dose dependent rect. 7 1
687 255.04 humidity 50.0 14400 < th dose dependent rect. 16 18
693 255.05 temperature 25.0 4320 > th dose independent rect. 20 8
695 255.05 radiation 10.0 14400 < th dose independent rect. 16 15
696 255.05 temperature 25.0 4320 > th dose dependent rect. 6 1
711 255.08 temperature 30.0 1440 < th dose independent rect. 1 10
713 255.08 atmosphere 1005.0 43200 < th dose dependent no NA NA
724 255.10 temperature 25.0 4320 < th dose independent rect. 17 14
729 255.11 precipitation 0.1 43200 > th dose dependent rect. 17 5
732 255.12 temperature 30.0 1440 < th dose independent rect. 8 3
811 255.20 temperature 30.0 1440 < th dose independent rect. 20 15
817 255.21 atmosphere 1010.0 43200 < th dose dependent rect. 7 4
861 255.30 humidity 60.0 14400 > th dose independent rect. 18 2
862 255.30 temperature 25.0 4320 < th dose independent rect. 20 12
863 255.30 atmosphere 1010.0 43200 < th dose dependent rect. 10 1
864 255.30 precipitation 0.1 43200 > th dose dependent rect. 20 2
883 255.33 wind 5.0 43200 < th dose independent rect. 20 1
884 255.33 temperature 25.0 4320 < th dose independent rect. 24 8
900 255.35 radiation 10.0 4320 < th dose dependent sin 7 NA
926 255.39 humidity 50.0 14400 < th dose independent rect. 17 17
964 255.43 atmosphere 1000.0 270 > th dose independent rect. 3 22