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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0621600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0423) R2 : 0.123
β1 : 0.227 (0.156) R2dD : 0.00449 R2D : -0.0181
β2 : -- (--) R2dC : -- R2C : --
β3 : 17 (2.21) R2dE : 1.88 R2E : -1.86
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 79.6 (10.1) R2dD*E : 1.97 R2D*E : -1.76
γ1 : -0.0812 (0.0883) R2dN8 : 0.00219 R2N8 : -0.00622
σ : 0.773
deviance : 275.2
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.07
memory length : 298
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274 0.771 2.98 0.2 0.0462 16.7 0.511 78.2 -0.083 12.5 7 272 20 1
302.71 0.81 2.88 0.121 0.0318 2.56 0.256 -- -0.0649 5.58 6.441 16 22.6 1.47
274.81 0.772 2.97 0.237 0.0809 17 -- 79.4 -0.0767 16.3 7.057 299 20 1.03
298.53 0.805 2.91 -0.109 0.104 3.74 -- -- -0.0834 18.2 6.576 7 23 0.935
275.2 0.773 2.98 0.227 -- 17 -- 79.6 -0.0812 -- 7.07 298 20 1.03
312.29 0.828 2.91 -0.0525 0.111 -- 0.155 -- -0.0886 19.1 -- -- -- --
312.36 0.828 2.91 -0.0557 0.111 -- -- -- -0.0883 19.2 -- -- -- --
299.09 0.805 2.9 -0.111 -- 3.75 -- -- -0.0856 -- 6.571 8 23.1 1.18
298.84 0.805 2.9 -- 0.105 3.7 -- -- -0.0715 18.1 6.545 7 23.1 1.21
313.01 0.827 2.91 -0.0577 -- -- -- -- -0.0902 -- -- -- -- --
312.44 0.827 2.91 -- 0.112 -- -- -- -0.0821 19.2 -- -- -- --
299.41 0.806 2.9 -- -- 3.71 -- -- -0.0733 -- 6.564 8 23.1 1.53
313.1 0.826 2.9 -- -- -- -- -- -0.0838 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.00 wind 7.0 270 > th dose independent rect. 20 1
2 274.25 wind 7.0 270 > th dose dependent rect. 20 1
7 281.08 wind 5.0 30 > th dose independent rect. 21 5
11 281.14 wind 5.0 30 > th dose independent rect. 21 9
35 284.86 wind 3.0 30 > th dose dependent rect. 21 4
125 290.08 humidity 80.0 10 < th dose dependent rect. 21 3
151 290.78 humidity 80.0 30 < th dose independent rect. 20 5
198 292.13 humidity 80.0 270 < th dose dependent rect. 21 1
217 293.26 wind 3.0 10 > th dose dependent rect. 24 1
251 294.21 atmosphere 1005.0 10 > th dose independent rect. 24 21
252 294.23 atmosphere 1005.0 90 > th dose independent rect. 3 17
284 294.99 wind 1.0 43200 < th dose independent rect. 22 2
290 295.15 wind 1.0 43200 < th dose dependent rect. 22 2
303 295.32 precipitation 0.1 30 > th dose independent rect. 22 2
305 295.32 precipitation 0.1 30 > th dose dependent rect. 22 2
318 295.51 radiation 10.0 43200 < th dose dependent rect. 16 3
321 295.51 radiation 10.0 43200 < th dose dependent rect. 16 8
325 295.51 radiation 10.0 43200 < th dose dependent rect. 16 12
342 295.73 radiation 10.0 43200 < th dose dependent rect. 17 1
343 295.74 temperature 30.0 90 > th dose dependent rect. 8 1
360 295.81 temperature 30.0 90 > th dose dependent rect. 18 16
394 295.88 atmosphere 1005.0 90 < th dose independent rect. 6 18
405 296.00 temperature 30.0 10 > th dose dependent rect. 9 1
449 296.04 temperature 30.0 90 > th dose independent rect. 8 1
490 296.15 humidity 80.0 270 < th dose independent rect. 21 1
508 296.21 humidity 60.0 43200 > th dose independent rect. 17 1
530 296.29 humidity 60.0 43200 < th dose independent rect. 16 18
533 296.32 humidity 60.0 43200 > th dose independent rect. 16 18
534 296.35 radiation 10.0 43200 > th dose independent rect. 16 2
548 296.35 radiation 40.0 43200 < th dose dependent rect. 17 8
555 296.37 wind 1.0 43200 > th dose independent rect. 22 2
566 296.40 humidity 60.0 43200 < th dose independent sin 11 NA
579 296.43 humidity 60.0 43200 < th dose independent rect. 15 20
586 296.45 humidity 60.0 43200 > th dose independent sin 11 NA
602 296.53 wind 1.0 43200 > th dose independent rect. 18 9
604 296.54 humidity 60.0 43200 > th dose independent rect. 17 16
605 296.55 humidity 60.0 43200 > th dose independent rect. 15 21
613 296.63 wind 1.0 43200 < th dose independent rect. 18 9
629 296.75 wind 1.0 43200 < th dose independent rect. 20 4
630 296.76 humidity 70.0 43200 < th dose dependent rect. 17 17
631 296.77 atmosphere 1005.0 90 < th dose independent rect. 3 21
639 296.79 wind 9.0 10 > th dose independent rect. 18 1
642 296.79 precipitation 0.1 270 > th dose independent rect. 20 1
646 296.79 radiation 40.0 43200 > th dose independent rect. 14 18
647 296.79 wind 9.0 10 > th dose dependent rect. 18 1
650 296.79 precipitation 0.1 270 > th dose dependent rect. 20 1
661 296.82 wind 1.0 43200 > th dose independent rect. 20 3
680 296.84 radiation 40.0 43200 > th dose independent rect. 14 2
697 296.84 radiation 1.0 30 > th dose dependent rect. 18 1
713 296.90 humidity 60.0 43200 < th dose independent rect. 17 1
714 296.90 wind 1.0 43200 > th dose independent rect. 20 7
755 297.02 atmosphere 1005.0 10 > th dose independent sin 0 NA
758 297.02 humidity 60.0 43200 < th dose independent rect. 17 16
791 297.13 wind 1.0 43200 < th dose independent rect. 20 7
803 297.20 humidity 80.0 43200 < th dose independent rect. 19 1
804 297.20 precipitation 0.1 1440 > th dose independent rect. 22 1
805 297.20 precipitation 0.1 1440 > th dose dependent rect. 22 1
811 297.24 radiation 1.0 43200 > th dose dependent rect. 17 1
867 297.38 wind 1.0 43200 < th dose dependent rect. 20 4
868 297.39 humidity 80.0 43200 > th dose independent rect. 19 1
929 297.52 radiation 10.0 43200 < th dose dependent sin 15 NA
938 297.54 humidity 70.0 43200 < th dose dependent sin 10 NA
942 297.55 atmosphere 1005.0 90 < th dose independent sin 0 NA
960 297.61 humidity 60.0 43200 > th dose independent rect. 17 11
980 297.66 atmosphere 1005.0 90 < th dose independent rect. 6 11
982 297.67 humidity 60.0 43200 > th dose independent rect. 17 8
988 297.68 atmosphere 1005.0 10 > th dose independent rect. 3 23
989 297.68 atmosphere 1005.0 10 > th dose independent rect. 14 23
995 297.71 wind 9.0 43200 > th dose dependent rect. 1 2