Os06g0621500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0621500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.52 | 0.369 | 7.35 | 1.05 | 0.16 | -0.324 | 0.0136 | -1.44 | 0.628 | 3.25 | 70 | 1253 | -- | -- |
| 65.12 | 0.376 | 7.32 | 1.24 | 0.145 | -0.477 | -0.181 | -- | 0.678 | 3.23 | 69.23 | 2665 | -- | -- |
| 61.52 | 0.365 | 7.35 | 1.05 | 0.16 | -0.324 | -- | -1.43 | 0.628 | 3.25 | 70.02 | 1252 | -- | -- |
| 65.23 | 0.376 | 7.32 | 1.25 | 0.147 | -0.479 | -- | -- | 0.676 | 3.48 | 69.21 | 2670 | -- | -- |
| 62.88 | 0.369 | 7.35 | 1.04 | -- | -0.285 | -- | -1.43 | 0.617 | -- | 70 | 1274 | -- | -- |
| 71.79 | 0.397 | 7.33 | 1.18 | 0.0925 | -- | -0.248 | -- | 0.64 | 4.06 | -- | -- | -- | -- |
| 71.92 | 0.397 | 7.33 | 1.18 | 0.098 | -- | -- | -- | 0.641 | 5.22 | -- | -- | -- | -- |
| 65.31 | 0.376 | 7.31 | 1.27 | -- | -0.512 | -- | -- | 0.707 | -- | 71 | 1775 | -- | -- |
| 77.35 | 0.41 | 7.34 | -- | 0.254 | -0.882 | -- | -- | 0.652 | 3.8 | 65.3 | 29922 | -- | -- |
| 72.42 | 0.398 | 7.33 | 1.19 | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
| 108.8 | 0.488 | 7.36 | -- | 0.119 | -- | -- | -- | 0.51 | 4.85 | -- | -- | -- | -- |
| 69.5 | 0.388 | 7.35 | -- | -- | -1.38 | -- | -- | 0.539 | -- | 62.17 | 29248 | -- | -- |
| 109.55 | 0.489 | 7.36 | -- | -- | -- | -- | -- | 0.512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 2 | 57.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 3 | 57.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 4 | 57.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 5 | 57.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 6 | 57.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 7 | 57.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 8 | 57.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 9 | 57.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 21 | 58.32 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 22 | 58.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 23 | 58.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 30 | 58.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 31 | 58.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 36 | 58.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 37 | 58.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 39 | 58.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 40 | 58.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 41 | 58.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 42 | 58.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 45 | 58.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 46 | 58.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 49 | 58.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 65 | 58.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 67 | 58.77 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 74 | 58.86 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 75 | 58.88 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 76 | 58.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 77 | 58.88 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 78 | 58.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 81 | 58.90 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 82 | 58.90 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 84 | 58.90 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 87 | 58.92 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 97 | 58.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 101 | 58.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 102 | 58.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 112 | 59.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 115 | 59.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 127 | 59.10 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 129 | 59.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 132 | 59.12 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 139 | 59.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 141 | 59.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 161 | 59.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 173 | 59.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 177 | 59.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 178 | 59.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 184 | 59.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 192 | 59.36 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 233 | 59.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 238 | 59.47 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 267 | 59.54 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 273 | 59.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 278 | 59.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 280 | 59.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 284 | 59.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 288 | 59.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 291 | 59.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 20 |
| 293 | 59.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 294 | 59.61 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 304 | 59.63 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 309 | 59.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 328 | 59.71 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 356 | 59.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 371 | 59.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 375 | 59.84 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 377 | 59.85 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 421 | 59.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 438 | 60.00 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 464 | 60.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 489 | 60.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 493 | 60.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 532 | 60.16 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 553 | 60.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 9 |
| 554 | 60.20 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 557 | 60.20 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 585 | 60.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 598 | 60.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 626 | 60.29 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 664 | 60.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 713 | 60.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 722 | 60.42 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 772 | 60.49 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 776 | 60.50 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 817 | 60.55 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 856 | 60.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 871 | 60.64 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 874 | 60.65 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 926 | 60.71 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 942 | 60.73 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 994 | 60.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |