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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0620200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0179) R2 : 0.00215
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0374 (0.0377) R2dN8 : 0.00277 R2N8 : 0.00215
σ : 0.337
deviance : 52.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.9 0.329 3.19 0.191 0.0969 0.24 0.133 1.05 -0.0594 8.22 91 5890 -- --
50.38 0.331 3.19 0.117 0.129 0.288 0.123 -- -0.0906 8.13 102.9 5036 -- --
48.94 0.326 3.19 0.187 0.0987 0.237 -- 1.05 -0.0582 7.74 89.4 5897 -- --
50.41 0.331 3.19 0.122 0.136 0.291 -- -- -0.0934 7.68 126 4997 -- --
49.46 0.328 3.19 0.186 -- 0.236 -- 1.04 -0.0552 -- 89.03 5856 -- --
51.42 0.336 3.18 0.102 0.0955 -- 0.124 -- -0.0266 8.14 -- -- -- --
51.46 0.336 3.18 0.105 0.0973 -- -- -- -0.027 7.65 -- -- -- --
51 0.333 3.19 0.122 -- 0.269 -- -- -0.0789 -- 89 5763 -- --
50.71 0.332 3.19 -- 0.104 0.297 -- -- -0.0934 7.21 88 4453 -- --
51.97 0.337 3.18 0.106 -- -- -- -- -0.0256 -- -- -- -- --
51.75 0.337 3.18 -- 0.0981 -- -- -- -0.0387 7.58 -- -- -- --
51.22 0.333 3.19 -- -- 0.293 -- -- -0.0904 -- 88 4334 -- --
52.27 0.337 3.18 -- -- -- -- -- -0.0374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.50 atmosphere 1000.0 10 > th dose independent rect. 21 23
3 47.85 radiation 1.0 1440 < th dose dependent rect. 21 1
6 47.96 humidity 90.0 10 < th dose dependent rect. 20 1
8 48.09 humidity 90.0 10 < th dose independent rect. 20 1
9 48.10 atmosphere 1005.0 10 > th dose independent rect. 20 1
10 48.10 temperature 25.0 30 > th dose dependent rect. 20 3
11 48.12 atmosphere 1005.0 10 > th dose dependent rect. 2 2
12 48.13 temperature 20.0 10 > th dose independent rect. 20 1
13 48.15 temperature 30.0 30 < th dose dependent rect. 20 1
15 48.17 wind 1.0 10 > th dose independent rect. 20 1
16 48.17 wind 5.0 10 < th dose independent rect. 20 1
19 48.17 temperature 10.0 10 > th dose independent rect. 20 1
21 48.17 temperature 30.0 10 < th dose independent rect. 20 1
22 48.17 humidity 50.0 10 > th dose independent rect. 20 1
25 48.17 atmosphere 995.0 10 > th dose independent rect. 20 1
28 48.17 atmosphere 1010.0 10 < th dose independent rect. 20 1
30 48.17 radiation 1.0 10 < th dose independent rect. 20 1
35 48.17 precipitation 0.1 10 < th dose independent rect. 20 1
36 48.17 temperature 10.0 10 > th dose independent rect. 21 23
37 48.17 atmosphere 995.0 10 > th dose dependent rect. 20 1
38 48.17 radiation 1.0 10 < th dose dependent rect. 20 1
43 48.17 precipitation 0.1 10 < th dose dependent rect. 20 1
46 48.18 wind 9.0 10 < th dose dependent rect. 20 1
47 48.18 temperature 10.0 10 > th dose dependent rect. 20 1
49 48.18 atmosphere 1015.0 30 < th dose dependent rect. 20 1
81 48.20 wind 1.0 30 > th dose dependent rect. 20 1
90 48.22 humidity 50.0 30 > th dose dependent rect. 20 1
96 48.24 temperature 10.0 1440 > th dose independent rect. 21 1
99 48.24 temperature 30.0 1440 < th dose independent rect. 21 1
103 48.24 humidity 50.0 1440 > th dose independent rect. 21 1
109 48.24 atmosphere 995.0 1440 > th dose independent rect. 21 1
110 48.24 radiation 1.0 1440 < th dose independent rect. 21 1
130 48.24 temperature 10.0 1440 > th dose independent rect. 22 23
151 48.28 precipitation 0.1 30 < th dose independent rect. 21 23
154 48.28 precipitation 0.1 30 < th dose dependent rect. 21 23
168 48.33 humidity 80.0 14400 < th dose dependent rect. 3 6
169 48.34 atmosphere 1000.0 30 > th dose independent rect. 3 23
191 48.52 wind 9.0 30 < th dose independent rect. 21 23
194 48.58 precipitation 0.1 1440 < th dose independent rect. 21 1
195 48.58 precipitation 0.1 1440 < th dose dependent rect. 21 1
197 48.63 atmosphere 1010.0 30 < th dose dependent rect. 2 1
204 48.70 humidity 80.0 14400 < th dose dependent rect. 22 12
205 48.71 wind 1.0 30 < th dose dependent rect. 2 1
211 48.74 wind 3.0 10 < th dose independent rect. 2 1
212 48.74 humidity 70.0 14400 > th dose independent rect. 8 1
213 48.74 temperature 15.0 10 > th dose independent rect. 3 23
216 48.74 wind 1.0 14400 < th dose dependent rect. 6 1
218 48.75 humidity 80.0 4320 < th dose independent rect. 3 8
223 48.76 temperature 30.0 10 < th dose dependent rect. 2 1
224 48.76 humidity 70.0 4320 > th dose dependent rect. 3 7
226 48.77 temperature 25.0 10 < th dose independent rect. 2 1
227 48.77 humidity 80.0 4320 > th dose independent rect. 3 8
228 48.77 humidity 90.0 30 > th dose dependent rect. 2 1
231 48.78 temperature 10.0 10 > th dose independent rect. 2 1
234 48.78 humidity 50.0 10 > th dose independent rect. 2 1
237 48.78 atmosphere 995.0 10 > th dose independent rect. 2 1
238 48.78 atmosphere 1010.0 10 < th dose independent rect. 2 1
240 48.78 radiation 1.0 10 < th dose independent rect. 2 1
245 48.78 precipitation 0.1 10 < th dose independent rect. 2 1
248 48.78 radiation 1.0 10 < th dose dependent rect. 2 1
253 48.78 precipitation 0.1 10 < th dose dependent rect. 2 1
256 48.79 humidity 50.0 10 > th dose dependent rect. 2 1
259 48.80 humidity 50.0 30 > th dose independent rect. 21 23
260 48.80 temperature 10.0 10 > th dose dependent rect. 2 1
263 48.80 radiation 1.0 43200 < th dose dependent rect. 3 1
271 48.82 humidity 80.0 4320 < th dose independent rect. 3 10
317 48.85 humidity 70.0 14400 < th dose independent rect. 7 3
338 48.86 humidity 70.0 14400 > th dose independent rect. 6 4
355 48.87 wind 1.0 30 > th dose independent rect. 2 1
367 48.87 humidity 50.0 4320 > th dose dependent rect. 23 14
368 48.88 temperature 25.0 90 > th dose independent rect. 1 1
372 48.88 atmosphere 995.0 10 > th dose dependent rect. 2 1
384 48.89 humidity 90.0 4320 < th dose dependent rect. 23 14
437 48.93 humidity 90.0 4320 < th dose dependent sin 6 NA
454 48.94 humidity 50.0 4320 > th dose dependent sin 6 NA
463 48.95 wind 9.0 30 < th dose independent rect. 3 23
562 49.02 humidity 80.0 4320 < th dose independent sin 5 NA
567 49.02 humidity 80.0 4320 > th dose independent rect. 23 14
599 49.04 humidity 80.0 4320 > th dose independent sin 5 NA
603 49.04 wind 1.0 30 > th dose independent rect. 21 23
624 49.05 humidity 80.0 4320 < th dose independent rect. 21 16
669 49.08 humidity 90.0 90 < th dose independent rect. 2 1
672 49.08 precipitation 0.1 30 < th dose independent rect. 3 23
684 49.08 precipitation 0.1 30 < th dose dependent rect. 3 23
737 49.11 humidity 70.0 4320 > th dose independent rect. 8 7
824 49.14 humidity 50.0 4320 > th dose dependent rect. 11 2
839 49.15 humidity 70.0 1440 < th dose independent rect. 10 1
914 49.16 humidity 90.0 4320 < th dose dependent rect. 11 2
991 49.19 wind 9.0 1440 < th dose independent rect. 3 1
992 49.19 temperature 10.0 1440 > th dose independent rect. 3 1
995 49.19 temperature 30.0 1440 < th dose independent rect. 3 1
999 49.19 humidity 50.0 1440 > th dose independent rect. 3 1