Os06g0619000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0619000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.74 | 0.516 | 7.78 | 1.09 | 1.33 | -1.8 | 0.352 | -1.5 | 0.459 | 22 | 22.88 | 617 | -- | -- |
| 122.91 | 0.516 | 7.8 | 0.928 | 1.36 | -1.51 | 0.683 | -- | 0.45 | 21.9 | 23.07 | 704 | -- | -- |
| 121.17 | 0.513 | 7.78 | 1.09 | 1.33 | -1.83 | -- | -1.67 | 0.458 | 22.1 | 22.86 | 639 | -- | -- |
| 124.46 | 0.52 | 7.8 | 0.889 | 1.33 | -1.52 | -- | -- | 0.428 | 22 | 23.12 | 682 | -- | -- |
| 215.28 | 0.683 | 7.79 | 0.971 | -- | -2.13 | -- | -1.34 | 0.268 | -- | 26.27 | 739 | -- | -- |
| 152.56 | 0.579 | 7.75 | 1.3 | 1.5 | -- | 0.566 | -- | 0.668 | 21.9 | -- | -- | -- | -- |
| 153.78 | 0.581 | 7.75 | 1.28 | 1.49 | -- | -- | -- | 0.666 | 22 | -- | -- | -- | -- |
| 217.55 | 0.687 | 7.82 | 0.715 | -- | -2.04 | -- | -- | 0.214 | -- | 26.5 | 747 | -- | -- |
| 142.65 | 0.556 | 7.84 | -- | 1.28 | -1.94 | -- | -- | 0.286 | 22 | 23 | 713 | -- | -- |
| 287.96 | 0.793 | 7.71 | 1.3 | -- | -- | -- | -- | 0.667 | -- | -- | -- | -- | -- |
| 197.09 | 0.657 | 7.79 | -- | 1.5 | -- | -- | -- | 0.524 | 22.1 | -- | -- | -- | -- |
| 229.41 | 0.705 | 7.85 | -- | -- | -2.33 | -- | -- | 0.0784 | -- | 26.55 | 753 | -- | -- |
| 332.54 | 0.851 | 7.75 | -- | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 2 | 117.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 13 | 117.94 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 23 | 118.21 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 24 | 118.21 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 32 | 118.43 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 50 | 118.81 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 9 |
| 71 | 119.23 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 76 | 119.30 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 14 |
| 96 | 119.59 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 303 | 121.53 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 310 | 121.57 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 327 | 121.73 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 336 | 121.81 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 345 | 121.88 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 381 | 122.10 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 397 | 122.20 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 426 | 122.40 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 430 | 122.44 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 461 | 122.67 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 495 | 122.85 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 522 | 123.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 616 | 123.58 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 631 | 123.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 642 | 123.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 728 | 124.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 768 | 124.72 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 863 | 125.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 883 | 125.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 899 | 125.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 950 | 125.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 1000 | 126.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |