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Os06g0618700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0523) R2 : 0.506
β1 : -1.23 (0.195) R2dD : 0.047 R2D : 0.0957
β2 : 2.15 (0.138) R2dC : 0.285 R2C : 0.13
β3 : -1.73 (0.122) R2dE : 0.25 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.628 (0.112) R2dN8 : 0.0463 R2N8 : 0.029
σ : 0.975
deviance : 438.26
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C
peak time of C : 19.9
E
wheather : humidity
threshold : 69
memory length : 1180
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.4
open length of G : 2.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.45 0.962 10.3 -1.25 2.15 -1.72 2.65 -0.67 0.599 19.9 69.08 1180 10.4 2.63
420.86 0.955 10.3 -1.15 2.15 -1.74 2.44 -- 0.631 19.9 69 1180 10.4 2.67
438.37 0.975 10.3 -1.25 2.14 -1.73 -- -0.0702 0.612 19.9 69.07 1180 10.4 2.65
438.26 0.975 10.3 -1.23 2.15 -1.73 -- -- 0.628 19.9 69 1180 10.4 2.7
630.73 1.17 10.3 -1.12 -- -1.41 -- 0.304 0.614 -- 69.79 1434 10.7 2.25
609.98 1.16 10.3 -1.7 1.66 -- 2.67 -- 0.417 18.9 -- -- -- --
627.94 1.17 10.3 -1.75 1.67 -- -- -- 0.421 19.1 -- -- -- --
626.19 1.17 10.2 -1.23 -- -1.51 -- -- 0.615 -- 69.52 1438 10.5 2.35
476.56 1.02 10.3 -- 2.15 -1.85 -- -- 0.814 19.9 69.14 1181 10.3 2.72
774.97 1.3 10.3 -1.79 -- -- -- -- 0.392 -- -- -- -- --
709.04 1.25 10.3 -- 1.69 -- -- -- 0.617 19.1 -- -- -- --
661.08 1.2 10.2 -- -- -1.72 -- -- 0.743 -- 69.8 1437 9.97 2.88
859.08 1.37 10.3 -- -- -- -- -- 0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 461.33 wind 1 43200 > th dose dependent rect. 1 3
2 461.92 wind 1 43200 > th dose dependent rect. 23 6
4 462.43 wind 9 43200 < th dose dependent rect. 1 3
5 462.55 wind 9 43200 < th dose dependent rect. 23 6
7 462.88 wind 9 43200 < th dose dependent rect. 1 5
8 463.02 humidity 70 1440 < th dose independent rect. 10 3
11 463.15 wind 1 43200 > th dose dependent rect. 1 5
13 463.42 humidity 70 1440 > th dose independent rect. 9 4
17 464.35 humidity 80 1440 < th dose dependent sin 9 NA
21 465.26 humidity 70 1440 < th dose independent rect. 11 1
25 465.41 humidity 70 1440 > th dose independent rect. 19 18
35 467.72 humidity 70 1440 < th dose independent rect. 19 18
44 468.65 humidity 80 1440 < th dose dependent rect. 19 16
50 469.55 temperature 20 270 > th dose independent rect. 18 15
52 469.62 humidity 90 720 < th dose dependent sin 12 NA
57 469.78 humidity 70 1440 > th dose independent rect. 22 15
59 469.82 humidity 70 1440 > th dose independent rect. 1 12
69 470.16 humidity 80 1440 < th dose independent rect. 1 9
70 470.24 humidity 70 1440 > th dose independent rect. 11 1
77 471.20 humidity 50 720 > th dose dependent rect. 16 10
78 471.26 humidity 50 720 > th dose dependent rect. 15 12
85 471.41 humidity 80 1440 < th dose independent rect. 5 5
89 471.47 humidity 80 1440 < th dose independent sin 5 NA
91 471.55 humidity 80 1440 > th dose independent rect. 1 9
94 471.67 humidity 70 1440 < th dose independent rect. 6 7
117 472.38 humidity 90 720 < th dose dependent rect. 17 15
141 473.23 humidity 80 1440 > th dose independent sin 5 NA
204 474.96 radiation 10 1440 > th dose independent rect. 17 19
207 475.24 humidity 90 1440 < th dose dependent rect. 22 16
215 475.58 humidity 80 1440 > th dose independent rect. 5 5
223 475.83 humidity 60 720 > th dose dependent sin 15 NA
241 476.36 humidity 50 720 > th dose dependent rect. 15 19
260 476.95 radiation 10 1440 > th dose independent rect. 6 6
271 477.12 radiation 20 1440 < th dose dependent rect. 6 7
275 477.18 humidity 60 720 > th dose dependent rect. 8 18
346 478.16 radiation 20 1440 < th dose dependent sin 6 NA
352 478.31 radiation 20 1440 < th dose dependent rect. 17 20
354 478.37 radiation 20 1440 < th dose dependent rect. 19 18
366 478.57 radiation 20 1440 < th dose dependent rect. 22 15
368 478.59 radiation 20 1440 < th dose dependent rect. 2 11
370 478.60 radiation 10 1440 > th dose independent sin 8 NA
372 478.61 radiation 20 1440 < th dose independent rect. 19 17
373 478.62 radiation 20 1440 < th dose independent rect. 16 20
376 478.63 humidity 60 720 > th dose dependent rect. 11 16
388 478.78 radiation 20 1440 < th dose independent rect. 2 10
390 478.78 radiation 20 1440 < th dose independent rect. 22 14
393 478.81 radiation 20 1440 < th dose independent rect. 6 6
406 478.95 humidity 70 1440 > th dose independent sin 8 NA
410 478.98 wind 3 43200 > th dose dependent rect. 1 10
434 479.30 radiation 1 1440 > th dose dependent rect. 6 6
443 479.38 radiation 1 1440 > th dose dependent sin 7 NA
479 479.64 humidity 80 720 > th dose independent rect. 7 20
550 480.06 radiation 1 1440 > th dose dependent rect. 17 19
573 480.36 radiation 1 1440 > th dose dependent rect. 6 4
611 480.62 radiation 30 1440 < th dose dependent rect. 8 2
651 481.10 wind 1 43200 < th dose independent rect. 23 7
666 481.17 humidity 90 720 < th dose dependent rect. 19 6
672 481.22 wind 3 43200 > th dose dependent rect. 4 5
726 481.52 radiation 20 1440 > th dose independent rect. 8 2
728 481.53 wind 1 43200 > th dose independent rect. 5 1
814 481.89 radiation 20 1440 < th dose independent sin 8 NA
824 481.96 wind 1 43200 > th dose independent rect. 24 6
916 482.52 humidity 80 43200 > th dose dependent rect. 11 3
938 482.67 radiation 20 4320 > th dose dependent rect. 7 1