Os06g0616400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0616400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.13 | 0.323 | 9.95 | 0.411 | 0.327 | -0.759 | 0.111 | -0.502 | 0.137 | 20.7 | 25.1 | 1980 | -- | -- |
| 47.48 | 0.321 | 9.96 | 0.344 | 0.322 | -0.681 | 0.0466 | -- | 0.127 | 20.7 | 25.4 | 1979 | -- | -- |
| 47.17 | 0.32 | 9.95 | 0.409 | 0.327 | -0.759 | -- | -0.517 | 0.138 | 20.6 | 25.1 | 1984 | -- | -- |
| 47.48 | 0.321 | 9.96 | 0.311 | 0.322 | -0.712 | -- | -- | 0.115 | 20.7 | 25.4 | 1980 | -- | -- |
| 52.66 | 0.338 | 9.94 | 0.374 | -- | -0.757 | -- | -0.422 | 0.112 | -- | 26.75 | 2135 | -- | -- |
| 55.4 | 0.349 | 9.92 | 0.565 | 0.363 | -- | 0.17 | -- | 0.282 | 20.9 | -- | -- | -- | -- |
| 55.49 | 0.349 | 9.92 | 0.559 | 0.364 | -- | -- | -- | 0.282 | 20.7 | -- | -- | -- | -- |
| 52.78 | 0.338 | 9.95 | 0.291 | -- | -0.739 | -- | -- | 0.111 | -- | 30.29 | 2116 | -- | -- |
| 48.9 | 0.326 | 9.98 | -- | 0.352 | -0.829 | -- | -- | 0.0454 | 20.6 | 25.4 | 3219 | -- | -- |
| 62.98 | 0.371 | 9.91 | 0.559 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 63.74 | 0.373 | 9.94 | -- | 0.362 | -- | -- | -- | 0.22 | 20.9 | -- | -- | -- | -- |
| 54.26 | 0.343 | 9.95 | -- | -- | -0.999 | -- | -- | 0.0956 | -- | 49.09 | 627 | -- | -- |
| 71.22 | 0.394 | 9.93 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.55 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 20 |
| 8 | 44.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 14 | 44.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 15 | 44.45 | temperature | 15 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 67 | 45.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 114 | 46.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 119 | 46.30 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 9 |
| 156 | 46.62 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 158 | 46.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 161 | 46.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 163 | 46.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 166 | 46.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 176 | 46.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 260 | 46.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 343 | 46.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 368 | 46.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 378 | 46.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 411 | 46.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 427 | 46.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 15 |
| 435 | 47.00 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 10 |
| 493 | 47.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 609 | 47.20 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 15 |
| 627 | 47.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 698 | 47.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 725 | 47.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 743 | 47.33 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 807 | 47.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 811 | 47.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 900 | 47.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 992 | 47.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |