Os06g0614100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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Os06g0614100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.65 | 0.445 | 6.45 | 2.37 | 0.539 | -0.587 | -0.299 | -1.25 | 0.998 | 6.32 | 20.03 | 13968 | -- | -- |
| 90.28 | 0.443 | 6.41 | 2.49 | 0.605 | -0.781 | -0.132 | -- | 1.1 | 6.1 | 30.26 | 23038 | -- | -- |
| 89.85 | 0.441 | 6.45 | 2.37 | 0.54 | -0.591 | -- | -1.21 | 1 | 6.43 | 20.03 | 13973 | -- | -- |
| 89.29 | 0.44 | 6.42 | 2.44 | 0.574 | -0.81 | -- | -- | 1.16 | 6.58 | 30.07 | 23249 | -- | -- |
| 104.48 | 0.476 | 6.45 | 2.36 | -- | -0.6 | -- | -1.11 | 1 | -- | 17.05 | 13580 | -- | -- |
| 108.67 | 0.489 | 6.48 | 2.54 | 0.563 | -- | -0.167 | -- | 0.867 | 6.72 | -- | -- | -- | -- |
| 108.73 | 0.488 | 6.48 | 2.54 | 0.562 | -- | -- | -- | 0.867 | 6.8 | -- | -- | -- | -- |
| 101.64 | 0.47 | 6.37 | 2.82 | -- | -0.995 | -- | -- | 1.25 | -- | 10.02 | 26707 | -- | -- |
| 158.41 | 0.586 | 6.43 | -- | 0.634 | -1.91 | -- | -- | 0.476 | 6.13 | 56.77 | 30258 | -- | -- |
| 125.25 | 0.523 | 6.49 | 2.55 | -- | -- | -- | -- | 0.878 | -- | -- | -- | -- | -- |
| 278.29 | 0.78 | 6.55 | -- | 0.593 | -- | -- | -- | 0.585 | 6.54 | -- | -- | -- | -- |
| 164.8 | 0.598 | 6.59 | -- | -- | -1.91 | -- | -- | 0.378 | -- | 57.19 | 30262 | -- | -- |
| 296.61 | 0.804 | 6.56 | -- | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.25 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 84.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 84.50 | wind | 5.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 6 | 84.53 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 7 | 84.57 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 8 | 84.61 | wind | 5.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 21 | 84.94 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 25 | 85.01 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 29 | 85.11 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 32 | 85.16 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 41 | 85.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 47 | 85.34 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 48 | 85.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 55 | 85.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 56 | 85.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 112 | 85.86 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 119 | 85.91 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 136 | 85.99 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 154 | 86.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 160 | 86.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 163 | 86.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 178 | 86.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 179 | 86.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 182 | 86.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 9 |
| 207 | 86.45 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 210 | 86.47 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 211 | 86.47 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 221 | 86.53 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 222 | 86.53 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 263 | 86.71 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 283 | 86.79 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 315 | 86.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 331 | 86.93 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 334 | 86.93 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 350 | 86.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 353 | 87.01 | wind | 5.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 354 | 87.01 | wind | 5.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 366 | 87.05 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 373 | 87.08 | wind | 5.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 384 | 87.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 387 | 87.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 428 | 87.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 429 | 87.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 437 | 87.24 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 458 | 87.29 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 516 | 87.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 573 | 87.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 574 | 87.59 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 575 | 87.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 605 | 87.69 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 612 | 87.71 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 630 | 87.73 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 636 | 87.75 | temperature | 25.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 637 | 87.75 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 658 | 87.77 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 659 | 87.77 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 715 | 87.87 | temperature | 25.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 780 | 87.99 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 819 | 88.04 | wind | 5.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 910 | 88.19 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 914 | 88.19 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 916 | 88.20 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 949 | 88.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 958 | 88.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 989 | 88.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |