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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0611300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0449) R2 : 0.00128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0724 (0.0945) R2dN8 : 0.00166 R2N8 : 0.00128
σ : 0.845
deviance : 327.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
309.89 0.827 2.91 0.346 0.071 -0.469 0.817 -4.38 0.0142 15.7 20.3 442 -- --
309.88 0.82 2.95 0.351 0.0143 1.5 1.24 -- 0.0432 16.8 14.96 2506 -- --
311.47 0.822 2.91 0.328 0.0841 -0.62 -- -4.77 0.0134 14 20.34 392 -- --
313.73 0.825 2.96 0.335 0.0444 1.77 -- -- 0.0253 16.1 14.88 2294 -- --
311.87 0.822 2.9 0.354 -- -0.613 -- -4.76 0.0147 -- 20.4 399 -- --
324.4 0.844 2.97 0.0491 0.0424 -- 1.16 -- -0.0714 17.4 -- -- -- --
327.55 0.848 2.97 0.0483 0.0759 -- -- -- -0.0656 14 -- -- -- --
313.78 0.825 2.95 0.325 -- 1.75 -- -- 0.00784 -- 14.87 2294 -- --
316.15 0.828 2.96 -- 0.0633 1.48 -- -- -0.00481 15.8 14.76 2299 -- --
327.9 0.846 2.97 0.0452 -- -- -- -- -0.0674 -- -- -- -- --
327.61 0.847 2.97 -- 0.075 -- -- -- -0.071 13.9 -- -- -- --
316.08 0.828 2.96 -- -- 1.57 -- -- -0.0362 -- 14.77 2293 -- --
327.95 0.845 2.97 -- -- -- -- -- -0.0724 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.03 wind 1.0 90 < th dose dependent rect. 8 1
2 306.16 temperature 20.0 90 < th dose independent rect. 10 2
4 306.16 temperature 20.0 90 < th dose dependent rect. 10 1
8 306.17 temperature 20.0 10 < th dose independent rect. 11 1
14 306.17 humidity 90.0 90 > th dose independent rect. 10 1
16 306.17 precipitation 0.1 90 > th dose independent rect. 10 1
39 306.17 humidity 90.0 90 > th dose dependent rect. 10 1
41 306.17 precipitation 0.1 90 > th dose dependent rect. 10 1
66 306.46 radiation 10.0 270 < th dose dependent rect. 9 1
68 307.13 temperature 25.0 30 < th dose dependent rect. 11 9
78 307.44 wind 1.0 90 < th dose independent rect. 8 1
84 307.59 atmosphere 1000.0 10 < th dose independent rect. 7 1
91 307.59 atmosphere 1000.0 10 < th dose dependent rect. 7 1
116 307.99 radiation 10.0 270 < th dose dependent rect. 8 5
118 308.09 atmosphere 1015.0 4320 > th dose independent rect. 12 1
123 308.14 atmosphere 1015.0 4320 > th dose dependent rect. 12 1
124 308.15 atmosphere 1015.0 4320 < th dose independent rect. 13 1
136 308.47 temperature 15.0 1440 < th dose independent rect. 4 1
139 308.48 temperature 15.0 720 > th dose independent rect. 12 21
151 308.74 temperature 15.0 1440 > th dose independent rect. 4 1
154 308.91 temperature 15.0 1440 < th dose dependent rect. 4 2
166 309.10 temperature 15.0 720 > th dose independent rect. 12 23
174 309.27 wind 9.0 90 > th dose independent rect. 11 1
177 309.29 temperature 15.0 720 > th dose independent rect. 24 23
178 309.29 wind 9.0 90 > th dose dependent rect. 10 3
183 309.34 temperature 15.0 4320 > th dose independent rect. 20 2
198 309.47 temperature 15.0 720 < th dose dependent rect. 24 19
200 309.52 wind 9.0 10 > th dose independent rect. 11 1
218 309.61 humidity 80.0 1440 > th dose dependent rect. 11 1
219 309.61 atmosphere 1015.0 4320 > th dose dependent rect. 12 9
220 309.63 atmosphere 1015.0 4320 > th dose independent rect. 12 9
230 309.68 temperature 15.0 4320 > th dose independent rect. 5 5
236 309.71 temperature 15.0 720 < th dose dependent rect. 24 1
275 309.83 humidity 80.0 10 > th dose independent rect. 9 4
290 309.90 temperature 15.0 4320 < th dose independent rect. 4 9
294 309.90 wind 9.0 10 > th dose dependent rect. 11 1
305 309.91 temperature 15.0 720 < th dose independent rect. 24 20
317 309.94 humidity 50.0 14400 > th dose independent rect. 1 8
319 309.95 precipitation 0.1 10 > th dose independent rect. 17 3
339 309.95 precipitation 0.1 10 > th dose dependent rect. 17 3
361 309.96 humidity 50.0 14400 > th dose independent rect. 18 15
380 310.05 temperature 15.0 4320 > th dose independent rect. 4 9
408 310.13 temperature 15.0 4320 < th dose independent rect. 4 13
419 310.19 radiation 1.0 4320 < th dose dependent rect. 7 10
458 310.25 temperature 15.0 720 > th dose independent rect. 16 15
497 310.38 temperature 15.0 720 < th dose dependent sin 3 NA
499 310.39 precipitation 0.1 4320 < th dose independent rect. 5 2
501 310.39 atmosphere 1015.0 4320 > th dose dependent sin 19 NA
502 310.39 precipitation 0.1 4320 < th dose dependent rect. 5 2
503 310.39 temperature 20.0 1440 < th dose dependent rect. 7 3
516 310.45 temperature 15.0 4320 > th dose independent rect. 13 1
519 310.45 temperature 15.0 4320 > th dose independent rect. 4 17
527 310.48 temperature 15.0 720 < th dose dependent sin 6 NA
544 310.51 temperature 20.0 720 < th dose dependent rect. 6 20
545 310.52 humidity 90.0 1440 > th dose independent rect. 10 1
561 310.54 temperature 15.0 720 > th dose independent rect. 19 17
565 310.55 temperature 10.0 43200 > th dose independent rect. 20 2
582 310.58 humidity 60.0 43200 > th dose independent rect. 1 1
597 310.60 temperature 15.0 4320 < th dose dependent rect. 5 13
615 310.64 temperature 15.0 720 < th dose independent sin 10 NA
621 310.65 temperature 15.0 720 < th dose independent rect. 24 1
622 310.65 temperature 15.0 720 > th dose independent rect. 20 10
635 310.68 temperature 20.0 720 < th dose dependent rect. 24 22
643 310.70 temperature 15.0 720 < th dose independent rect. 22 5
645 310.70 temperature 15.0 720 < th dose independent rect. 20 11
649 310.70 temperature 15.0 720 < th dose independent rect. 20 17
659 310.71 temperature 15.0 720 < th dose independent rect. 21 8
667 310.71 humidity 50.0 90 > th dose dependent rect. 17 20
668 310.72 precipitation 0.1 4320 > th dose independent rect. 5 2
729 310.77 temperature 15.0 720 > th dose independent rect. 15 22
732 310.78 temperature 15.0 720 < th dose independent sin 3 NA
742 310.78 temperature 20.0 4320 < th dose dependent rect. 12 1
745 310.78 wind 9.0 90 > th dose dependent rect. 18 19
763 310.80 humidity 60.0 90 > th dose dependent rect. 9 12
774 310.81 temperature 15.0 720 < th dose dependent rect. 23 6
778 310.82 temperature 15.0 720 > th dose independent rect. 18 15
780 310.82 precipitation 0.1 4320 > th dose dependent rect. 5 2
789 310.84 temperature 10.0 43200 > th dose independent rect. 18 4
794 310.84 wind 9.0 90 > th dose dependent sin 6 NA
821 310.87 temperature 25.0 720 < th dose dependent rect. 8 10
833 310.89 temperature 15.0 4320 > th dose independent sin 1 NA
839 310.89 temperature 15.0 720 < th dose dependent rect. 23 16
844 310.90 temperature 15.0 4320 < th dose independent sin 1 NA
850 310.91 wind 9.0 90 > th dose independent sin 6 NA
860 310.92 atmosphere 1010.0 1440 > th dose dependent rect. 5 1
861 310.92 temperature 25.0 720 < th dose dependent rect. 9 5
868 310.93 temperature 10.0 43200 > th dose independent rect. 12 10
877 310.94 temperature 15.0 720 < th dose independent rect. 24 15
885 310.95 temperature 15.0 4320 > th dose independent rect. 12 3
897 310.96 temperature 15.0 720 < th dose dependent rect. 22 14
910 310.98 wind 9.0 14400 > th dose dependent rect. 19 1
914 310.99 temperature 15.0 720 > th dose independent sin 11 NA
956 311.01 temperature 15.0 4320 > th dose independent rect. 12 10
960 311.01 temperature 20.0 90 < th dose dependent rect. 10 18
961 311.01 temperature 20.0 720 < th dose dependent rect. 16 22
984 311.04 humidity 60.0 30 > th dose dependent rect. 19 18
987 311.05 temperature 15.0 720 < th dose independent rect. 23 3