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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0611200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0291) R2 : 0.688
β1 : 0.96 (0.108) R2dD : 0.0502 R2D : 0.0602
β2 : 1.82 (0.0836) R2dC : 0.406 R2C : 0.549
β3 : -0.966 (0.105) R2dE : 0.0748 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0629 (0.0621) R2dN8 : 0.000745 R2N8 : -0.00555
σ : 0.544
deviance : 136.46
__
_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 29.6
memory length : 324
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.24 0.524 3.84 0.91 1.84 -0.938 2.17 0.401 0.0376 19.5 29.6 307 -- --
123.85 0.518 3.84 0.975 1.8 -0.863 2.2 -- -0.000635 19.6 29 323 -- --
135.96 0.543 3.81 1.04 1.84 -0.845 -- -1.15 0.0871 19.3 29.53 312 -- --
136.46 0.544 3.83 0.96 1.82 -0.966 -- -- 0.0629 19.4 29.6 324 -- --
235.12 0.714 3.81 0.725 -- -2.11 -- -0.182 -0.149 -- 28.4 514 -- --
143.12 0.561 3.84 1.09 2.18 -- 2.51 -- 0.0568 19.1 -- -- -- --
159.34 0.591 3.84 1.05 2.19 -- -- -- 0.0642 19 -- -- -- --
235.12 0.714 3.84 0.644 -- -2.1 -- -- -0.2 -- 28.44 514 -- --
156.8 0.583 3.86 -- 1.75 -1.09 -- -- -0.06 19.4 29.6 324 -- --
410.93 0.947 3.79 1 -- -- -- -- 0.0234 -- -- -- -- --
188.22 0.642 3.86 -- 2.18 -- -- -- -0.0524 19 -- -- -- --
245.85 0.73 3.86 -- -- -2.17 -- -- -0.278 -- 28.42 514 -- --
437.39 0.976 3.81 -- -- -- -- -- -0.0877 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.34 temperature 30 270 < th dose independent rect. 21 22
5 119.35 temperature 30 720 < th dose independent rect. 6 6
6 119.46 temperature 30 270 < th dose independent rect. 9 10
7 119.48 temperature 30 720 < th dose independent rect. 22 14
8 119.56 temperature 30 720 < th dose independent rect. 24 13
9 119.58 temperature 30 720 < th dose independent rect. 1 11
20 120.39 temperature 30 270 < th dose dependent rect. 11 8
23 120.55 temperature 30 720 < th dose independent rect. 9 3
39 121.43 temperature 30 720 < th dose independent rect. 11 1
44 121.56 temperature 30 270 < th dose independent rect. 15 22
59 121.98 wind 5 720 < th dose independent rect. 5 9
65 122.11 temperature 30 30 < th dose dependent rect. 9 14
68 122.22 temperature 30 270 < th dose independent sin 0 NA
87 122.72 temperature 30 270 < th dose independent rect. 3 16
94 122.84 temperature 25 90 > th dose dependent rect. 13 22
107 123.11 temperature 30 10 < th dose dependent rect. 12 11
109 123.17 temperature 30 720 < th dose independent sin 7 NA
117 123.27 radiation 40 720 < th dose independent rect. 1 9
120 123.35 radiation 40 720 < th dose dependent rect. 16 20
137 123.55 humidity 60 720 > th dose independent rect. 11 1
148 123.71 radiation 10 270 > th dose independent rect. 10 23
150 123.72 temperature 10 90 > th dose dependent sin 21 NA
162 123.77 temperature 10 270 > th dose dependent rect. 11 13
175 123.98 humidity 70 90 < th dose independent sin 19 NA
208 124.48 temperature 30 720 > th dose independent rect. 10 3
210 124.50 humidity 70 90 < th dose independent rect. 13 22
217 124.59 temperature 20 30 > th dose dependent rect. 13 9
222 124.63 temperature 25 270 > th dose dependent rect. 6 14
224 124.63 temperature 25 270 > th dose dependent rect. 3 17
228 124.65 humidity 60 720 > th dose independent rect. 24 13
236 124.70 radiation 20 270 < th dose dependent rect. 6 22
266 124.76 radiation 1 270 > th dose dependent rect. 10 23
295 124.94 temperature 30 270 > th dose independent rect. 16 22
313 125.01 humidity 60 270 > th dose independent rect. 15 22
339 125.10 temperature 25 270 > th dose dependent sin 23 NA
363 125.22 wind 5 720 > th dose independent rect. 11 1
367 125.22 radiation 40 720 < th dose independent rect. 22 14
378 125.26 temperature 25 30 > th dose dependent rect. 13 20
394 125.32 temperature 25 270 > th dose dependent rect. 16 23
428 125.42 temperature 30 720 > th dose dependent rect. 11 1
435 125.43 wind 5 720 < th dose independent sin 2 NA
436 125.43 radiation 40 720 < th dose dependent rect. 24 12
445 125.46 radiation 20 720 < th dose independent rect. 16 19
446 125.46 temperature 25 90 > th dose dependent sin 20 NA
449 125.47 wind 1 720 > th dose dependent rect. 11 1
452 125.48 temperature 30 720 > th dose dependent rect. 10 3
456 125.49 temperature 25 270 > th dose dependent rect. 10 23
471 125.54 temperature 30 720 < th dose dependent rect. 7 6
482 125.55 temperature 10 720 > th dose dependent rect. 10 7
572 125.72 temperature 30 30 < th dose dependent sin 20 NA
605 125.80 humidity 70 270 < th dose independent rect. 10 10
661 125.88 temperature 30 720 > th dose independent sin 8 NA
674 125.89 temperature 25 270 > th dose dependent no NA NA
701 125.94 temperature 25 30 > th dose dependent rect. 13 7
703 125.94 temperature 30 270 > th dose dependent rect. 16 21
707 125.96 radiation 10 720 > th dose independent rect. 17 21
741 126.02 temperature 30 270 < th dose dependent rect. 17 1
778 126.07 temperature 30 720 < th dose independent rect. 9 18
813 126.12 humidity 60 270 > th dose independent rect. 8 11
815 126.12 radiation 20 270 < th dose independent rect. 7 22
823 126.14 radiation 40 720 < th dose independent rect. 7 5
848 126.17 radiation 40 720 < th dose independent rect. 16 19
857 126.19 humidity 70 90 > th dose independent rect. 9 14
860 126.19 temperature 10 720 > th dose dependent rect. 11 4
866 126.20 humidity 70 90 > th dose independent rect. 9 22
879 126.21 temperature 30 270 < th dose independent rect. 8 23
880 126.21 temperature 30 720 > th dose dependent sin 8 NA
899 126.24 humidity 70 270 < th dose dependent rect. 17 22
903 126.25 radiation 40 720 < th dose dependent rect. 22 14
922 126.33 radiation 10 720 > th dose independent rect. 6 8
949 126.37 radiation 10 720 > th dose independent sin 8 NA
952 126.37 humidity 70 270 < th dose independent rect. 16 23
985 126.43 humidity 70 90 < th dose independent rect. 13 7