Os06g0611000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 65kD microtubule associated protein.
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Os06g0611000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 65kD microtubule associated protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.33 | 0.263 | 9.69 | 1.2 | 0.383 | -1.13 | 0.333 | -1.31 | 0.326 | 1.48 | 23.9 | 4423 | -- | -- |
| 32.26 | 0.265 | 9.72 | 1.09 | 0.365 | -0.851 | 0.368 | -- | 0.307 | 1.4 | 27.42 | 2946 | -- | -- |
| 31.77 | 0.262 | 9.69 | 1.19 | 0.382 | -1.12 | -- | -1.31 | 0.325 | 1.34 | 23.92 | 4389 | -- | -- |
| 32.7 | 0.266 | 9.73 | 1.09 | 0.352 | -0.84 | -- | -- | 0.295 | 1.2 | 27.73 | 2847 | -- | -- |
| 39.32 | 0.292 | 9.69 | 1.21 | -- | -1.09 | -- | -1.14 | 0.333 | -- | 25.08 | 3925 | -- | -- |
| 45.4 | 0.316 | 9.68 | 1.45 | 0.406 | -- | 0.347 | -- | 0.513 | 1.61 | -- | -- | -- | -- |
| 45.87 | 0.317 | 9.68 | 1.44 | 0.405 | -- | -- | -- | 0.512 | 1.48 | -- | -- | -- | -- |
| 38.56 | 0.289 | 9.73 | 1.08 | -- | -0.925 | -- | -- | 0.288 | -- | 29.33 | 2472 | -- | -- |
| 38.45 | 0.289 | 9.8 | -- | 0.378 | -1.27 | -- | -- | -0.0273 | 1.51 | 43.56 | 47520 | -- | -- |
| 55.95 | 0.35 | 9.68 | 1.46 | -- | -- | -- | -- | 0.52 | -- | -- | -- | -- | -- |
| 100.48 | 0.469 | 9.72 | -- | 0.431 | -- | -- | -- | 0.351 | 1.59 | -- | -- | -- | -- |
| 43.63 | 0.308 | 9.81 | -- | -- | -1.36 | -- | -- | -0.0223 | -- | 23.5 | 32690 | -- | -- |
| 111.83 | 0.494 | 9.71 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 30.23 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 7 | 30.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 8 | 30.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 103 | 30.73 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 115 | 30.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 120 | 30.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 314 | 31.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 434 | 31.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 512 | 31.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 513 | 31.51 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 560 | 31.57 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 575 | 31.58 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 586 | 31.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 660 | 31.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 724 | 31.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 798 | 31.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 824 | 31.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 847 | 31.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 878 | 31.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 896 | 31.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 898 | 31.93 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 925 | 31.95 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 926 | 31.95 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |