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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0610800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.09 (0.0549) R2 : 0.536
β1 : -3.36 (0.201) R2dD : 0.297 R2D : 0.203
β2 : 1.86 (0.139) R2dC : 0.182 R2C : 0.159
β3 : 1.52 (0.243) R2dE : 0.0411 R2E : 0.0291
β4 : 3.5 (0.596) R2dD*C : 0.0354 R2D*C : 0.0154
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.839 (0.118) R2dN8 : 0.0701 R2N8 : 0.0151
σ : 1.02
deviance : 483.21
__
_____
C
peak time of C : 8.06
E
wheather : radiation
threshold : 39.82
memory length : 245
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
480.09 1.03 6.09 -3.35 1.87 1.35 3.42 -1.69 -0.845 7.92 39.59 248 -- --
483.21 1.02 6.09 -3.36 1.86 1.52 3.5 -- -0.839 8.06 39.82 245 -- --
514.21 1.06 6.1 -3.29 1.85 1.35 -- -1.93 -0.849 7.93 39.62 245 -- --
519.64 1.06 6.09 -3.26 1.85 1.62 -- -- -0.836 8.05 39.81 253 -- --
601.51 1.14 6.07 -3.2 -- 1.86 -- -2.52 -0.784 -- 34.78 761 -- --
516.01 1.06 6.1 -3.28 1.93 -- 3.68 -- -0.923 7.35 -- -- -- --
551.55 1.1 6.11 -3.21 1.95 -- -- -- -0.933 7.08 -- -- -- --
581.52 1.12 6.09 -3.08 -- 2.05 -- -- -0.666 -- 28.86 757 -- --
789.24 1.31 6.02 -- 1.92 1.5 -- -- -0.47 8.11 33.42 253 -- --
752.71 1.28 6.15 -3.17 -- -- -- -- -0.898 -- -- -- -- --
822.35 1.34 6.03 -- 1.92 -- -- -- -0.576 7.19 -- -- -- --
761.59 1.29 5.99 -- -- 2.4 -- -- -0.273 -- 10.08 877 -- --
1017.37 1.49 6.07 -- -- -- -- -- -0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 463.73 temperature 15 30 > th dose independent rect. 22 19
5 468.37 temperature 20 720 < th dose independent rect. 4 2
8 470.56 temperature 15 270 > th dose independent rect. 10 14
9 470.76 humidity 60 10 > th dose independent rect. 17 20
13 471.62 radiation 20 720 < th dose independent rect. 16 19
14 471.63 radiation 20 720 < th dose independent rect. 16 17
20 472.35 temperature 15 270 > th dose independent rect. 19 21
31 473.95 radiation 30 90 < th dose independent rect. 16 21
38 474.77 temperature 15 10 > th dose independent rect. 20 21
43 475.38 humidity 90 14400 < th dose independent rect. 2 1
44 475.69 radiation 30 270 < th dose independent rect. 23 23
48 476.10 radiation 1 720 < th dose dependent rect. 16 2
49 476.10 radiation 40 720 < th dose dependent rect. 16 17
51 476.16 radiation 40 720 < th dose dependent rect. 16 21
52 476.42 atmosphere 1005 270 > th dose independent rect. 11 3
54 476.71 atmosphere 1010 10 < th dose dependent rect. 17 5
59 476.85 atmosphere 1005 90 > th dose independent rect. 9 7
66 477.17 temperature 15 10 > th dose independent rect. 9 23
71 477.30 radiation 10 720 < th dose dependent rect. 21 21
72 477.43 radiation 20 720 < th dose independent sin 10 NA
77 477.49 radiation 40 720 < th dose dependent rect. 16 19
79 477.53 radiation 40 270 < th dose independent rect. 14 23
93 478.03 radiation 10 720 < th dose dependent rect. 6 13
94 478.06 radiation 1 720 < th dose independent rect. 16 1
100 478.33 temperature 20 270 < th dose dependent rect. 18 3
101 478.40 atmosphere 1005 270 > th dose independent rect. 9 12
103 478.56 radiation 30 90 < th dose independent rect. 16 23
109 478.75 temperature 20 720 < th dose dependent rect. 16 5
116 478.96 atmosphere 1005 270 < th dose dependent rect. 3 16
117 478.98 radiation 30 270 < th dose independent sin 6 NA
123 479.13 radiation 30 720 < th dose independent rect. 6 22
133 479.36 temperature 20 720 < th dose dependent rect. 18 1
139 479.50 radiation 40 720 < th dose dependent rect. 20 23
151 479.80 humidity 50 1440 > th dose dependent rect. 9 1
159 479.87 atmosphere 1000 90 > th dose independent rect. 23 17
162 479.91 humidity 90 1440 < th dose dependent rect. 9 1
174 480.07 temperature 25 270 < th dose independent rect. 22 18
177 480.09 radiation 30 720 < th dose independent rect. 6 16
179 480.14 radiation 40 720 < th dose dependent rect. 6 14
180 480.15 atmosphere 1000 270 > th dose dependent rect. 11 3
190 480.32 radiation 10 720 > th dose dependent rect. 16 16
192 480.33 radiation 1 720 > th dose dependent sin 12 NA
193 480.34 humidity 60 10 > th dose independent rect. 2 10
196 480.37 radiation 40 720 < th dose dependent rect. 7 12
202 480.43 radiation 30 270 > th dose independent rect. 7 7
228 480.57 temperature 25 10 < th dose independent rect. 12 5
239 480.78 humidity 60 90 > th dose independent rect. 2 10
240 480.79 atmosphere 1005 270 < th dose dependent sin 2 NA
258 480.93 radiation 30 90 < th dose independent rect. 2 23
267 480.99 temperature 25 720 < th dose dependent rect. 4 1
277 481.13 radiation 20 720 < th dose independent rect. 6 14
278 481.15 atmosphere 1005 270 > th dose independent sin 22 NA
281 481.19 radiation 30 270 < th dose independent rect. 24 11
289 481.23 radiation 40 720 < th dose dependent sin 10 NA
312 481.49 radiation 20 720 < th dose independent rect. 7 12
317 481.53 radiation 20 270 > th dose dependent rect. 6 8
333 481.55 radiation 30 270 < th dose independent rect. 21 23
340 481.64 radiation 1 720 > th dose dependent rect. 12 23
347 481.72 humidity 90 720 > th dose dependent rect. 11 10
351 481.76 radiation 40 270 < th dose independent no NA NA
359 481.81 atmosphere 1005 720 < th dose dependent rect. 3 9
380 481.89 radiation 40 720 < th dose dependent rect. 23 23
385 481.94 wind 1 14400 < th dose dependent rect. 12 1
401 482.05 radiation 40 720 < th dose dependent rect. 5 23
423 482.17 radiation 30 270 > th dose dependent rect. 12 23
435 482.24 wind 7 10 > th dose dependent rect. 17 2
450 482.32 wind 7 10 > th dose dependent rect. 17 4
470 482.43 wind 1 14400 < th dose independent rect. 15 2
490 482.52 humidity 50 1440 > th dose independent rect. 18 18
517 482.65 radiation 40 270 < th dose independent rect. 10 23
526 482.71 radiation 30 90 < th dose independent rect. 2 10
561 482.97 radiation 30 270 > th dose independent sin 4 NA
573 483.07 radiation 40 720 < th dose dependent no NA NA
587 483.13 humidity 70 14400 > th dose independent rect. 22 9
598 483.18 atmosphere 1000 10 > th dose dependent rect. 12 5
601 483.19 radiation 20 270 > th dose dependent sin 5 NA
602 483.20 temperature 30 10 < th dose dependent rect. 12 5
620 483.25 humidity 90 270 < th dose dependent rect. 19 19
630 483.29 radiation 40 90 < th dose dependent rect. 16 21
669 483.33 atmosphere 1000 270 > th dose dependent rect. 10 11
673 483.34 wind 7 10 > th dose dependent rect. 17 12
691 483.36 wind 7 10 > th dose dependent rect. 17 10
716 483.47 atmosphere 1005 720 < th dose dependent rect. 7 1
736 483.53 radiation 1 720 > th dose independent rect. 4 1
740 483.53 humidity 70 14400 > th dose independent rect. 2 5
748 483.53 radiation 1 720 > th dose dependent rect. 4 1
763 483.57 atmosphere 1000 10 > th dose independent rect. 22 19
777 483.62 wind 9 10 > th dose independent rect. 17 3
786 483.65 radiation 1 720 > th dose dependent rect. 14 20
788 483.66 humidity 70 14400 < th dose dependent rect. 6 1
851 483.79 atmosphere 995 90 > th dose dependent rect. 23 17
922 483.96 atmosphere 1000 270 > th dose dependent sin 21 NA
944 484.03 radiation 10 720 > th dose dependent rect. 6 2
946 484.04 wind 1 14400 > th dose independent rect. 15 2
963 484.06 atmosphere 1000 30 > th dose independent rect. 4 12