Os06g0610600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0610600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 331.92 | 0.856 | 5.34 | -1.58 | 0.72 | -2.2 | 0.999 | 2.56 | -0.542 | 21.5 | 25.15 | 797 | 4.02 | 1.05 |
| 340.12 | 0.859 | 5.3 | -1.36 | 0.574 | -2.49 | -0.53 | -- | -0.521 | 21.4 | 25.94 | 833 | 4.05 | 0.133 |
| 333.32 | 0.85 | 5.33 | -1.47 | 0.738 | -2.21 | -- | 1.73 | -0.505 | 21.5 | 25.15 | 806 | 4.03 | 0.866 |
| 340.5 | 0.859 | 5.29 | -1.13 | 0.701 | -2.31 | -- | -- | -0.4 | 21.4 | 25.34 | 831 | 4.15 | 0.0251 |
| 342.51 | 0.862 | 5.29 | -1.31 | -- | -2.58 | -- | 1.81 | -0.452 | -- | 27.41 | 713 | 4.03 | 0.894 |
| 417.29 | 0.958 | 5.24 | -0.87 | 1.65 | -- | -1.57 | -- | -0.0827 | 23 | -- | -- | -- | -- |
| 427.5 | 0.968 | 5.23 | -0.805 | 1.66 | -- | -- | -- | -0.076 | 22.8 | -- | -- | -- | -- |
| 348.35 | 0.869 | 5.28 | -1.19 | -- | -2.77 | -- | -- | -0.454 | -- | 27.35 | 716 | 4.02 | 0.3 |
| 378.98 | 0.907 | 5.29 | -- | 0.702 | -2.31 | -- | -- | -0.398 | 21.3 | 25.35 | 830 | 4.15 | 0.0244 |
| 598.4 | 1.14 | 5.19 | -0.77 | -- | -- | -- | -- | -0.0655 | -- | -- | -- | -- | -- |
| 444.57 | 0.986 | 5.21 | -- | 1.65 | -- | -- | -- | 0.0136 | 22.8 | -- | -- | -- | -- |
| 384.71 | 0.914 | 5.24 | -- | -- | -2.53 | -- | -- | -0.286 | -- | 28.14 | 739 | 4.12 | 0.0625 |
| 614.06 | 1.16 | 5.17 | -- | -- | -- | -- | -- | 0.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 334.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 335.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 3 | 336.42 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 12 | 341.22 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 24 | 342.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 25 | 342.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 26 | 343.02 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 29 | 343.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 35 | 343.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 40 | 344.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 60 | 344.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 128 | 347.17 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 150 | 347.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 154 | 347.99 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 331 | 353.83 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 347 | 354.17 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 361 | 354.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 669 | 360.65 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 720 | 361.34 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 736 | 361.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 743 | 361.68 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 804 | 362.37 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 820 | 362.56 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 845 | 362.95 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 851 | 363.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 866 | 363.29 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 869 | 363.33 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 971 | 364.35 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 998 | 364.65 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |