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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0609900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0333) R2 : 0.749
β1 : -1.6 (0.121) R2dD : 0.1 R2D : 0.0661
β2 : 1.06 (0.152) R2dC : 0.102 R2C : 0.373
β3 : 1.37 (0.121) R2dE : 0.263 R2E : 0.519
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.59 (0.0709) R2dN8 : 0.0518 R2N8 : 0.00642
σ : 0.616
deviance : 175.21
__
_____
C
peak time of C : 11.2
E
wheather : radiation
threshold : 0.03
memory length : 126
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.57 0.617 5.83 -1.66 1.07 1.35 0.717 -1.21 -0.605 11.4 0.0253 119 -- --
173.82 0.614 5.82 -1.57 1.05 1.38 -0.582 -- -0.591 11.3 0.02989 126 -- --
172.9 0.612 5.83 -1.61 1.07 1.35 -- -0.662 -0.607 11.4 0.02 121 -- --
175.21 0.616 5.82 -1.6 1.06 1.37 -- -- -0.59 11.2 0.03 126 -- --
190.13 0.642 5.86 -1.66 -- 2.09 -- -0.795 -0.661 -- 0.18 116 -- --
198.89 0.661 5.77 -1.45 2.59 -- -0.556 -- -0.476 12.2 -- -- -- --
200.23 0.663 5.77 -1.47 2.6 -- -- -- -0.479 12.2 -- -- -- --
192.93 0.647 5.88 -1.69 -- 2.07 -- -- -0.665 -- 0.04 110 -- --
241.81 0.724 5.79 -- 1.09 1.36 -- -- -0.406 11.4 0.1799 121 -- --
624.41 1.17 5.83 -1.56 -- -- -- -- -0.518 -- -- -- -- --
257.5 0.751 5.74 -- 2.62 -- -- -- -0.314 12.2 -- -- -- --
262.78 0.755 5.82 -- -- 2.07 -- -- -0.463 -- 0.1791 117 -- --
688.52 1.22 5.79 -- -- -- -- -- -0.345 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.98 radiation 1.0 90 < th dose dependent rect. 19 22
3 161.42 radiation 1.0 10 < th dose dependent rect. 20 20
4 161.55 radiation 1.0 90 < th dose independent rect. 19 22
6 161.80 radiation 1.0 10 < th dose independent rect. 20 20
16 162.91 radiation 1.0 10 < th dose dependent rect. 20 18
20 163.63 radiation 1.0 10 < th dose independent rect. 20 18
28 164.54 radiation 1.0 10 < th dose dependent rect. 20 16
31 164.67 radiation 1.0 10 < th dose dependent rect. 20 12
43 164.98 radiation 1.0 90 < th dose dependent rect. 19 13
53 165.21 radiation 1.0 10 < th dose independent rect. 20 10
54 165.24 radiation 1.0 10 < th dose independent rect. 20 16
65 165.58 temperature 20.0 10 > th dose independent rect. 5 15
70 165.73 radiation 1.0 90 < th dose dependent sin 11 NA
89 166.45 wind 5.0 90 < th dose independent rect. 4 15
98 166.92 wind 9.0 90 < th dose dependent rect. 5 14
101 167.25 radiation 1.0 90 < th dose independent sin 11 NA
103 167.28 precipitation 0.1 10 < th dose independent rect. 20 9
104 167.28 precipitation 0.1 10 < th dose dependent rect. 20 9
106 167.33 radiation 1.0 90 > th dose independent sin 11 NA
107 167.34 temperature 15.0 10 > th dose independent rect. 20 9
116 167.66 precipitation 0.1 10 < th dose independent rect. 5 15
118 167.66 precipitation 0.1 10 < th dose dependent rect. 5 15
119 167.68 precipitation 0.1 90 < th dose independent rect. 19 10
120 167.68 precipitation 0.1 90 < th dose dependent rect. 19 10
130 168.17 precipitation 0.1 90 < th dose independent rect. 5 14
131 168.17 precipitation 0.1 90 < th dose dependent rect. 5 14
135 168.35 temperature 30.0 10 < th dose independent rect. 20 9
136 168.35 humidity 50.0 10 > th dose independent rect. 20 9
139 168.35 atmosphere 995.0 10 > th dose independent rect. 20 9
146 168.35 temperature 10.0 10 > th dose independent rect. 5 15
148 168.35 atmosphere 1015.0 10 < th dose independent rect. 5 15
160 168.47 wind 9.0 10 < th dose independent rect. 20 9
165 168.72 temperature 30.0 90 < th dose independent rect. 19 10
166 168.72 humidity 50.0 90 > th dose independent rect. 19 10
168 168.72 atmosphere 995.0 90 > th dose independent rect. 19 10
169 168.72 radiation 20.0 90 < th dose independent rect. 19 10
172 168.72 temperature 10.0 90 > th dose independent rect. 5 14
173 168.72 atmosphere 1015.0 90 < th dose independent rect. 5 14
180 168.83 wind 9.0 90 < th dose independent rect. 19 10
183 168.95 radiation 1.0 90 > th dose independent rect. 17 14
189 169.06 humidity 50.0 10 > th dose dependent rect. 20 9
196 169.29 wind 9.0 10 < th dose dependent rect. 20 9
197 169.35 wind 9.0 10 < th dose independent rect. 5 15
199 169.36 wind 9.0 90 < th dose independent rect. 5 14
220 169.53 temperature 10.0 10 > th dose dependent rect. 20 9
223 169.58 humidity 50.0 270 > th dose independent rect. 7 8
248 170.60 wind 1.0 270 > th dose independent rect. 7 8
268 170.77 atmosphere 995.0 10 > th dose independent rect. 5 15
282 171.31 humidity 50.0 90 > th dose independent rect. 19 22
291 171.50 temperature 10.0 10 > th dose dependent rect. 5 15
296 171.56 radiation 1.0 270 > th dose independent rect. 15 16
305 171.93 humidity 50.0 10 > th dose dependent rect. 10 19
306 171.94 humidity 50.0 270 > th dose independent rect. 9 17
310 172.00 atmosphere 1015.0 10 < th dose dependent rect. 20 9
393 172.87 humidity 50.0 10 > th dose dependent rect. 12 17
404 172.98 wind 9.0 270 < th dose independent rect. 7 8
418 173.18 atmosphere 1015.0 10 < th dose independent rect. 20 9
449 173.35 atmosphere 995.0 270 > th dose independent rect. 7 8
452 173.39 temperature 10.0 270 > th dose independent rect. 7 8
453 173.39 atmosphere 1015.0 270 < th dose independent rect. 7 8
454 173.39 temperature 10.0 270 > th dose independent rect. 15 16
463 173.50 humidity 50.0 270 > th dose independent rect. 8 19
468 173.56 precipitation 0.1 270 < th dose independent rect. 7 8
469 173.56 humidity 50.0 270 > th dose independent rect. 7 21
470 173.56 precipitation 0.1 270 < th dose dependent rect. 7 8
474 173.61 temperature 10.0 270 > th dose dependent rect. 7 7
492 173.71 wind 9.0 270 < th dose independent rect. 15 16
497 173.78 humidity 50.0 90 > th dose dependent rect. 11 17
499 173.80 radiation 40.0 270 < th dose independent rect. 15 16
523 173.95 precipitation 0.1 270 < th dose independent rect. 15 16
524 173.95 precipitation 0.1 270 < th dose dependent rect. 15 16
605 174.46 humidity 50.0 270 > th dose independent rect. 19 19
607 174.47 wind 1.0 270 > th dose independent rect. 14 17
618 174.57 atmosphere 995.0 270 > th dose dependent rect. 9 5
629 174.68 radiation 1.0 270 < th dose independent rect. 9 18
670 174.88 temperature 25.0 270 > th dose independent rect. 15 2
677 174.92 temperature 20.0 90 > th dose independent rect. 17 2
703 175.12 radiation 1.0 270 < th dose dependent rect. 9 18
721 175.25 precipitation 0.1 270 < th dose independent rect. 14 18
722 175.25 precipitation 0.1 270 < th dose dependent rect. 14 18
729 175.28 atmosphere 1005.0 270 > th dose independent rect. 9 5
763 175.42 radiation 1.0 270 < th dose dependent rect. 5 22
783 175.56 temperature 25.0 270 > th dose dependent rect. 9 4
794 175.62 temperature 10.0 90 > th dose dependent rect. 17 2
803 175.67 temperature 20.0 10 > th dose independent rect. 17 3
805 175.67 temperature 25.0 270 > th dose dependent rect. 19 18
815 175.74 humidity 90.0 90 < th dose independent rect. 17 2
816 175.75 wind 5.0 90 < th dose independent rect. 15 4
828 175.85 temperature 10.0 270 > th dose dependent rect. 15 3
831 175.87 atmosphere 995.0 270 > th dose independent rect. 15 16
835 175.90 humidity 80.0 10 > th dose independent rect. 11 18
852 176.07 atmosphere 1005.0 270 > th dose independent rect. 10 3
856 176.09 precipitation 0.1 90 < th dose independent rect. 17 2
857 176.09 precipitation 0.1 90 < th dose dependent rect. 17 2
870 176.14 radiation 1.0 90 > th dose dependent rect. 17 14
895 176.28 temperature 10.0 270 > th dose dependent rect. 14 5
902 176.31 humidity 90.0 270 < th dose independent rect. 15 3
915 176.37 temperature 25.0 270 > th dose dependent rect. 10 1
921 176.41 precipitation 0.1 90 < th dose independent rect. 19 22
926 176.41 precipitation 0.1 90 < th dose dependent rect. 19 22
928 176.43 wind 9.0 90 < th dose independent rect. 17 2
950 176.55 humidity 50.0 10 > th dose independent rect. 10 19
960 176.61 temperature 10.0 90 > th dose independent rect. 17 2
962 176.61 atmosphere 1010.0 90 < th dose independent rect. 17 2
964 176.61 radiation 20.0 90 < th dose independent rect. 17 2
967 176.61 temperature 10.0 90 > th dose independent rect. 19 22
981 176.62 wind 9.0 270 < th dose independent rect. 9 17
989 176.65 temperature 10.0 1440 > th dose independent rect. 21 8
992 176.65 temperature 30.0 1440 < th dose independent rect. 21 8
996 176.65 humidity 50.0 1440 > th dose independent rect. 21 8