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Os06g0608300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Small nuclear ribonucleoprotein component.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0149) R2 : 0.77
β1 : 1.35 (0.0544) R2dD : 0.321 R2D : 0.258
β2 : 1.16 (0.0376) R2dC : 0.481 R2C : 0.447
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.247 (0.0317) R2dN8 : 0.041 R2N8 : -0.0134
σ : 0.28
deviance : 35.63
__
_____
C
peak time of C : 15.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.58 0.264 11.6 1.39 0.994 -0.342 0.252 0.274 0.272 16.8 2 1 -- --
31.69 0.262 11.6 1.4 0.983 -0.307 0.0653 -- 0.254 16.6 9.28 3 -- --
31.12 0.26 11.6 1.42 1.02 -0.341 -- 0.338 0.252 16.8 9.3 2 -- --
31.37 0.261 11.6 1.37 1.02 -0.368 -- -- 0.267 16.9 9.28 2 -- --
80 0.417 11.6 1.5 -- -0.55 -- 0.292 0.314 -- 9.38 12 -- --
35.62 0.28 11.6 1.35 1.16 -- 0.0257 -- 0.247 15.7 -- -- -- --
35.63 0.28 11.6 1.35 1.16 -- -- -- 0.247 15.7 -- -- -- --
40.63 0.297 11.6 1.34 -- -0.889 -- -- 0.354 -- 0.24 455 -- --
77.41 0.412 11.6 -- 0.955 -0.391 -- -- 0.104 17 10.82 2 -- --
110.18 0.49 11.6 1.3 -- -- -- -- 0.217 -- -- -- -- --
83.56 0.428 11.6 -- 1.13 -- -- -- 0.0972 15.7 -- -- -- --
82.09 0.422 11.6 -- -- -1.21 -- -- 0.304 -- 0.1331 501 -- --
154.77 0.581 11.6 -- -- -- -- -- 0.0723 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.69 wind 5.0 270 < th dose independent rect. 3 2
2 27.77 precipitation 0.1 270 < th dose independent rect. 3 2
3 27.77 precipitation 0.1 270 < th dose dependent rect. 3 2
5 27.94 wind 5.0 270 < th dose independent rect. 1 5
6 27.95 wind 1.0 270 > th dose independent rect. 3 1
7 27.95 wind 9.0 270 < th dose independent rect. 5 22
8 28.00 wind 5.0 90 < th dose independent rect. 3 5
10 28.05 temperature 10.0 10 > th dose dependent rect. 8 19
13 28.11 precipitation 0.1 90 < th dose independent rect. 3 5
14 28.11 precipitation 0.1 90 < th dose dependent rect. 3 5
15 28.14 precipitation 0.1 10 < th dose independent rect. 3 5
16 28.14 precipitation 0.1 10 < th dose dependent rect. 3 5
18 28.16 wind 9.0 90 < th dose independent rect. 8 19
19 28.18 radiation 1.0 270 < th dose dependent rect. 3 2
22 28.20 temperature 10.0 270 > th dose independent rect. 3 2
24 28.20 temperature 30.0 270 < th dose independent rect. 3 2
25 28.20 humidity 50.0 270 > th dose independent rect. 3 2
28 28.20 atmosphere 995.0 270 > th dose independent rect. 3 2
29 28.20 atmosphere 1010.0 270 < th dose independent rect. 3 2
31 28.20 radiation 20.0 270 < th dose independent rect. 3 2
34 28.20 temperature 10.0 270 > th dose independent rect. 5 22
35 28.20 radiation 30.0 270 < th dose dependent rect. 3 2
39 28.23 radiation 1.0 270 < th dose independent rect. 3 2
49 28.29 wind 7.0 270 < th dose independent rect. 6 19
50 28.30 precipitation 0.1 90 < th dose independent rect. 8 19
52 28.30 precipitation 0.1 90 < th dose dependent rect. 8 19
54 28.32 wind 5.0 10 < th dose independent rect. 3 5
56 28.33 precipitation 0.1 270 < th dose independent rect. 1 5
58 28.33 precipitation 0.1 270 < th dose dependent rect. 1 5
60 28.34 temperature 10.0 90 > th dose independent rect. 3 5
62 28.34 temperature 30.0 90 < th dose independent rect. 3 5
63 28.34 humidity 50.0 90 > th dose independent rect. 3 5
65 28.34 atmosphere 995.0 90 > th dose independent rect. 3 5
66 28.34 atmosphere 1015.0 90 < th dose independent rect. 3 5
67 28.34 temperature 10.0 90 > th dose independent rect. 8 19
69 28.36 radiation 40.0 90 < th dose independent rect. 3 5
70 28.36 wind 9.0 10 < th dose independent rect. 8 19
72 28.39 wind 1.0 270 > th dose independent rect. 2 3
96 28.43 atmosphere 1000.0 10 > th dose dependent rect. 3 5
97 28.44 wind 1.0 270 > th dose independent rect. 1 5
99 28.44 wind 9.0 270 < th dose dependent rect. 3 2
106 28.50 precipitation 0.1 10 < th dose independent rect. 8 19
108 28.50 wind 9.0 270 < th dose dependent rect. 6 9
109 28.50 precipitation 0.1 10 < th dose dependent rect. 8 19
112 28.51 precipitation 0.1 270 < th dose independent rect. 5 21
113 28.51 wind 9.0 90 < th dose dependent rect. 3 5
114 28.51 precipitation 0.1 270 < th dose dependent rect. 5 21
120 28.55 radiation 10.0 270 < th dose dependent rect. 1 10
122 28.56 temperature 10.0 10 > th dose independent rect. 3 5
124 28.56 temperature 30.0 10 < th dose independent rect. 3 5
125 28.56 humidity 50.0 10 > th dose independent rect. 3 5
128 28.56 atmosphere 995.0 10 > th dose independent rect. 3 5
129 28.56 atmosphere 1015.0 10 < th dose independent rect. 3 5
131 28.56 temperature 10.0 10 > th dose independent rect. 8 19
136 28.57 radiation 10.0 270 < th dose dependent rect. 1 12
155 28.61 temperature 10.0 270 > th dose independent rect. 1 5
157 28.61 temperature 30.0 270 < th dose independent rect. 1 5
158 28.61 humidity 50.0 270 > th dose independent rect. 1 5
161 28.61 atmosphere 995.0 270 > th dose independent rect. 1 5
162 28.61 atmosphere 1015.0 270 < th dose independent rect. 1 5
163 28.61 radiation 20.0 270 < th dose independent rect. 1 5
166 28.61 temperature 10.0 270 > th dose independent rect. 6 19
167 28.61 precipitation 0.1 270 < th dose independent rect. 6 19
168 28.61 wind 9.0 10 < th dose dependent rect. 3 5
171 28.61 precipitation 0.1 270 < th dose dependent rect. 6 19
175 28.63 radiation 10.0 270 < th dose dependent rect. 1 6
176 28.64 radiation 40.0 270 < th dose dependent rect. 1 5
177 28.65 radiation 40.0 10 < th dose independent rect. 3 5
182 28.66 radiation 10.0 270 < th dose dependent rect. 1 17
187 28.68 wind 7.0 270 < th dose independent rect. 6 9
191 28.69 radiation 40.0 90 < th dose dependent rect. 3 5
230 28.79 radiation 40.0 270 < th dose dependent rect. 15 15
236 28.82 temperature 30.0 270 < th dose dependent rect. 3 2
243 28.83 wind 9.0 270 < th dose dependent rect. 6 19
244 28.84 atmosphere 1005.0 270 > th dose independent rect. 3 2
247 28.84 atmosphere 1005.0 90 > th dose independent rect. 3 5
280 28.88 atmosphere 1000.0 270 > th dose dependent rect. 2 3
308 28.90 humidity 60.0 90 > th dose dependent rect. 21 6
311 28.90 wind 9.0 90 < th dose dependent rect. 8 19
322 28.93 wind 9.0 270 < th dose dependent rect. 1 5
337 28.97 radiation 1.0 270 < th dose independent rect. 1 18
348 28.99 temperature 30.0 90 < th dose dependent rect. 3 5
353 29.00 radiation 30.0 270 < th dose independent rect. 15 14
374 29.03 temperature 15.0 270 > th dose independent rect. 6 9
375 29.03 radiation 1.0 270 < th dose independent rect. 2 15
391 29.06 radiation 1.0 270 < th dose independent rect. 2 10
393 29.06 atmosphere 995.0 90 > th dose independent rect. 8 19
394 29.06 radiation 1.0 270 < th dose dependent sin 3 NA
459 29.14 humidity 50.0 270 > th dose dependent rect. 3 2
482 29.16 temperature 10.0 270 > th dose dependent rect. 3 2
498 29.19 atmosphere 995.0 10 > th dose independent rect. 8 19
506 29.20 radiation 1.0 270 > th dose independent sin 3 NA
512 29.20 wind 1.0 270 > th dose independent rect. 10 10
544 29.25 atmosphere 1000.0 270 > th dose dependent rect. 1 5
562 29.27 atmosphere 995.0 270 > th dose independent rect. 6 19
569 29.29 wind 9.0 1440 < th dose independent rect. 4 5
570 29.29 temperature 10.0 1440 > th dose independent rect. 4 5
573 29.29 humidity 50.0 1440 > th dose independent rect. 4 5
575 29.29 atmosphere 995.0 1440 > th dose independent rect. 4 5
576 29.29 atmosphere 1015.0 1440 < th dose independent rect. 4 5
578 29.29 temperature 10.0 1440 > th dose independent rect. 9 19
614 29.32 atmosphere 1005.0 270 > th dose independent rect. 1 5
625 29.33 wind 9.0 270 < th dose independent rect. 20 14
634 29.34 temperature 10.0 270 > th dose independent rect. 10 10
635 29.34 atmosphere 1015.0 270 < th dose independent rect. 10 10
636 29.34 precipitation 0.1 270 < th dose independent rect. 5 10
637 29.34 temperature 10.0 270 > th dose independent rect. 20 14
638 29.34 humidity 50.0 270 > th dose independent rect. 20 14
639 29.34 atmosphere 995.0 270 > th dose independent rect. 20 14
645 29.34 precipitation 0.1 270 < th dose dependent rect. 5 10
650 29.35 radiation 1.0 270 < th dose independent sin 3 NA
705 29.39 temperature 10.0 10 > th dose dependent rect. 3 5
715 29.40 radiation 10.0 10 < th dose independent rect. 3 19
718 29.41 humidity 80.0 90 > th dose independent rect. 21 6
720 29.41 atmosphere 1015.0 270 < th dose independent rect. 5 10
721 29.41 temperature 10.0 270 > th dose independent rect. 15 14
741 29.42 atmosphere 995.0 270 > th dose independent rect. 5 21
797 29.47 humidity 50.0 90 > th dose dependent rect. 3 5
803 29.48 radiation 40.0 10 < th dose dependent rect. 3 5
810 29.49 precipitation 0.1 270 < th dose independent rect. 15 15
813 29.49 precipitation 0.1 270 < th dose dependent rect. 15 15
817 29.50 atmosphere 995.0 270 > th dose independent rect. 5 10
827 29.50 temperature 30.0 90 < th dose dependent rect. 3 18
908 29.58 wind 9.0 270 < th dose independent rect. 15 14
937 29.61 radiation 40.0 270 < th dose independent rect. 11 19
941 29.61 humidity 60.0 270 > th dose dependent rect. 21 3
950 29.62 precipitation 0.1 270 < th dose independent rect. 1 18
955 29.62 precipitation 0.1 270 < th dose dependent rect. 1 18
960 29.63 precipitation 0.1 270 < th dose independent rect. 10 10
962 29.63 precipitation 0.1 270 < th dose dependent rect. 10 10
981 29.65 humidity 50.0 270 > th dose independent rect. 1 18