Os06g0608000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGPS/D10.
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Os06g0608000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGPS/D10.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.76 | 0.561 | 2.99 | 0.128 | 0.101 | 1.89 | -0.582 | 9.18 | -0.00213 | 18.3 | 6.732 | 1661 | 8.1 | 0.76 |
| 171.75 | 0.61 | 3 | 0.278 | 0.107 | 1.56 | 0.861 | -- | 0.0338 | 5.92 | 6.5 | 1557 | 8.03 | 0.566 |
| 143.6 | 0.558 | 3 | 0.136 | 0.0997 | 1.88 | -- | 9.19 | -0.00401 | 18.2 | 6.734 | 1665 | 8.1 | 0.759 |
| 166.11 | 0.6 | 2.99 | 0.128 | 0.0808 | 1.43 | -- | -- | 0.0793 | 5.92 | 6.419 | 1644 | 8.22 | 0.448 |
| 144.1 | 0.559 | 2.99 | 0.135 | -- | 1.88 | -- | 9.19 | -0.00663 | -- | 6.741 | 1665 | 8.1 | 0.757 |
| 180.83 | 0.63 | 2.95 | -0.045 | 0.0981 | -- | -0.59 | -- | -0.0276 | 18.5 | -- | -- | -- | -- |
| 181.69 | 0.631 | 2.96 | -0.0367 | 0.0963 | -- | -- | -- | -0.0293 | 18.1 | -- | -- | -- | -- |
| 159.79 | 0.589 | 2.98 | 0.0521 | -- | 1.1 | -- | -- | 0.0661 | -- | 6.5 | 1648 | 8.25 | 0.317 |
| 158.91 | 0.587 | 2.95 | -- | 0.0256 | 1.03 | -- | -- | 0.0555 | 17 | 6.496 | 1657 | 8.25 | 0.349 |
| 182.17 | 0.631 | 2.95 | -0.0394 | -- | -- | -- | -- | -0.0314 | -- | -- | -- | -- | -- |
| 181.73 | 0.631 | 2.95 | -- | 0.0968 | -- | -- | -- | -0.0252 | 18.1 | -- | -- | -- | -- |
| 152.95 | 0.576 | 2.94 | -- | -- | 1.3 | -- | -- | 0.0564 | -- | 6.492 | 1537 | 8.32 | 0.25 |
| 182.21 | 0.63 | 2.95 | -- | -- | -- | -- | -- | -0.027 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.61 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 149.66 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 4 | 149.77 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 6 | 149.82 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 14 | 150.82 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 16 | 150.90 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 17 | 150.92 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 24 | 151.45 | wind | 7.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 28 | 151.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 6 |
| 40 | 152.53 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 47 | 153.14 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 55 | 153.54 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 58 | 153.63 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 68 | 153.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 69 | 154.00 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 11 |
| 71 | 154.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 21 | 7 |
| 82 | 154.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 84 | 154.58 | wind | 7.0 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 85 | 154.59 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 98 | 154.86 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 104 | 154.98 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 111 | 155.03 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 113 | 155.05 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 116 | 155.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 139 | 155.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 140 | 155.46 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 146 | 155.55 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 158 | 155.71 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 160 | 155.76 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 193 | 156.07 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 213 | 156.28 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 224 | 156.43 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 238 | 156.58 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 240 | 156.63 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 244 | 156.63 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 291 | 156.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 314 | 157.03 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 327 | 157.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 341 | 157.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 343 | 157.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 344 | 157.14 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 364 | 157.28 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 367 | 157.30 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 370 | 157.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 376 | 157.33 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 383 | 157.40 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 394 | 157.47 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 429 | 157.51 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 433 | 157.54 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 439 | 157.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 448 | 157.63 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 474 | 157.76 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 480 | 157.78 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 488 | 157.81 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 497 | 157.85 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 502 | 157.91 | temperature | 20.0 | 720 | > th | dose independent | sin | 21 | NA |
| 518 | 157.99 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 606 | 158.21 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 608 | 158.21 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 784 | 158.88 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 831 | 159.17 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 846 | 159.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 15 |
| 907 | 159.40 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 945 | 159.60 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 19 | 1 |