Os06g0607000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-1,3-glucanase-like protein.
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Os06g0607000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-1,3-glucanase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.45 | 0.251 | 10.8 | 0.456 | 1.04 | -0.383 | -0.266 | -0.422 | -0.00767 | 7.52 | 63 | 2725 | -- | -- |
| 28.69 | 0.249 | 10.8 | 0.463 | 1.04 | -0.403 | -0.249 | -- | 0.000515 | 7.51 | 63 | 2709 | -- | -- |
| 28.65 | 0.249 | 10.8 | 0.45 | 1.04 | -0.384 | -- | -0.42 | -0.00677 | 7.53 | 62.86 | 2722 | -- | -- |
| 28.88 | 0.25 | 10.8 | 0.445 | 1.04 | -0.41 | -- | -- | 0.00501 | 7.52 | 62.53 | 2716 | -- | -- |
| 85.86 | 0.432 | 10.8 | 0.466 | -- | -0.381 | -- | -0.411 | 0.0123 | -- | 62.3 | 2850 | -- | -- |
| 33.48 | 0.271 | 10.8 | 0.496 | 1.04 | -- | -0.284 | -- | -0.121 | 7.37 | -- | -- | -- | -- |
| 33.7 | 0.272 | 10.8 | 0.49 | 1.04 | -- | -- | -- | -0.121 | 7.37 | -- | -- | -- | -- |
| 86.07 | 0.432 | 10.8 | 0.464 | -- | -0.404 | -- | -- | 0.0244 | -- | 62 | 2846 | -- | -- |
| 34 | 0.272 | 10.8 | -- | 1.04 | -0.458 | -- | -- | -0.0309 | 7.53 | 62.83 | 2670 | -- | -- |
| 91.1 | 0.446 | 10.8 | 0.507 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 40.03 | 0.296 | 10.8 | -- | 1.04 | -- | -- | -- | -0.175 | 7.34 | -- | -- | -- | -- |
| 91.48 | 0.445 | 10.8 | -- | -- | -0.452 | -- | -- | -0.0203 | -- | 60 | 2808 | -- | -- |
| 97.89 | 0.462 | 10.9 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.28 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 2 | 26.29 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 9 | 26.34 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 11 | 26.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 20 | 26.43 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 29 | 26.47 | wind | 1 | 43200 | > th | dose dependent | sin | 10 | NA |
| 33 | 26.49 | wind | 9 | 43200 | < th | dose dependent | sin | 10 | NA |
| 54 | 26.56 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 63 | 26.58 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 67 | 26.60 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 71 | 26.61 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 77 | 26.62 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 96 | 26.64 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 109 | 26.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 125 | 26.70 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 137 | 26.71 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 145 | 26.72 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 162 | 26.74 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 165 | 26.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 170 | 26.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 189 | 26.77 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 209 | 26.79 | wind | 3 | 43200 | > th | dose independent | sin | 9 | NA |
| 227 | 26.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 230 | 26.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 262 | 26.83 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 263 | 26.83 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 293 | 26.85 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 299 | 26.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 311 | 26.86 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 312 | 26.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 313 | 26.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 320 | 26.87 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 324 | 26.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 325 | 26.87 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 336 | 26.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 346 | 26.88 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 365 | 26.89 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 392 | 26.90 | wind | 3 | 43200 | < th | dose independent | sin | 9 | NA |
| 393 | 26.90 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 401 | 26.90 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 404 | 26.90 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 424 | 26.91 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 431 | 26.92 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 448 | 26.92 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 502 | 26.94 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 510 | 26.95 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 522 | 26.95 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 542 | 26.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 546 | 26.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 547 | 26.96 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 556 | 26.96 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 569 | 26.96 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 582 | 26.96 | wind | 7 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 605 | 26.97 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 606 | 26.97 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 626 | 26.98 | wind | 9 | 43200 | < th | dose independent | sin | 2 | NA |
| 632 | 26.98 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 644 | 26.98 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 662 | 26.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 680 | 26.99 | wind | 7 | 43200 | > th | dose dependent | sin | 2 | NA |
| 701 | 27.00 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 720 | 27.00 | wind | 9 | 43200 | > th | dose dependent | sin | 19 | NA |
| 772 | 27.02 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |
| 832 | 27.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 855 | 27.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 876 | 27.05 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 889 | 27.05 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 948 | 27.07 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 971 | 27.07 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |