Os06g0606900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0606900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.93 | 0.318 | 8.33 | 1.31 | 0.116 | -0.87 | 0.195 | 2.28 | 0.396 | 11.1 | 20.49 | 264 | -- | -- |
| 47.53 | 0.321 | 8.38 | 0.913 | 0.214 | -0.87 | -0.535 | -- | 0.265 | 3.51 | 7.808 | 770 | -- | -- |
| 46.07 | 0.316 | 8.33 | 1.33 | 0.124 | -0.875 | -- | 2.4 | 0.401 | 11 | 20.71 | 249 | -- | -- |
| 48.48 | 0.324 | 8.38 | 0.946 | 0.235 | -0.878 | -- | -- | 0.284 | 3.72 | 11.61 | 796 | -- | -- |
| 46.46 | 0.317 | 8.33 | 1.35 | -- | -0.876 | -- | 2.34 | 0.407 | -- | 20.4 | 375 | -- | -- |
| 58.28 | 0.358 | 8.41 | 0.718 | 0.32 | -- | -0.389 | -- | 0.145 | 5.75 | -- | -- | -- | -- |
| 58.59 | 0.358 | 8.41 | 0.717 | 0.32 | -- | -- | -- | 0.147 | 6.14 | -- | -- | -- | -- |
| 49.56 | 0.328 | 8.38 | 0.935 | -- | -0.951 | -- | -- | 0.289 | -- | 14.91 | 464 | -- | -- |
| 69.21 | 0.387 | 8.41 | -- | 0.269 | -0.447 | -- | -- | 0.124 | 5.02 | 10.59 | 757 | -- | -- |
| 63.9 | 0.374 | 8.41 | 0.726 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 72.13 | 0.397 | 8.42 | -- | 0.33 | -- | -- | -- | 0.0672 | 6.03 | -- | -- | -- | -- |
| 70.26 | 0.39 | 8.41 | -- | -- | -0.525 | -- | -- | 0.148 | -- | 20.62 | 378 | -- | -- |
| 77.79 | 0.412 | 8.43 | -- | -- | -- | -- | -- | 0.0736 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.79 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 41.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 15 | 42.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 20 | 42.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 25 | 42.88 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 31 | 42.93 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 32 | 42.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 35 | 42.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 58 | 43.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 68 | 43.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 79 | 43.43 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 87 | 43.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 97 | 43.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 131 | 43.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 132 | 43.76 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 148 | 43.84 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 210 | 44.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 228 | 44.23 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 252 | 44.30 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 304 | 44.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 309 | 44.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 311 | 44.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 313 | 44.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 316 | 44.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 319 | 44.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 323 | 44.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 328 | 44.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 335 | 44.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 341 | 44.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 401 | 44.69 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 406 | 44.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 506 | 44.95 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 610 | 45.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 629 | 45.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 680 | 45.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 681 | 45.27 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 754 | 45.38 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 822 | 45.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 832 | 45.46 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 835 | 45.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 861 | 45.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 884 | 45.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 986 | 45.62 | wind | 3 | 43200 | > th | dose dependent | sin | 18 | NA |
| 988 | 45.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 999 | 45.63 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 19 |