Os06g0605600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0605600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.54 | 0.422 | 8.59 | -0.157 | 0.807 | 0.559 | 0.425 | -1.09 | 0.333 | 22.2 | 19.97 | 1301 | -- | -- |
| 82.58 | 0.423 | 8.6 | -0.231 | 0.882 | 0.555 | 0.537 | -- | 0.301 | 22 | 19.99 | 1203 | -- | -- |
| 80.79 | 0.419 | 8.59 | -0.149 | 0.828 | 0.569 | -- | -1.27 | 0.331 | 22 | 19.98 | 1249 | -- | -- |
| 83.79 | 0.426 | 8.59 | -0.234 | 0.883 | 0.556 | -- | -- | 0.297 | 21.9 | 19.97 | 1199 | -- | -- |
| 113.35 | 0.499 | 8.6 | -0.25 | -- | 0.31 | -- | 0.644 | 0.187 | -- | 19.98 | 1249 | -- | -- |
| 92.8 | 0.452 | 8.62 | -0.279 | 0.703 | -- | 0.526 | -- | 0.189 | 22 | -- | -- | -- | -- |
| 93.8 | 0.454 | 8.62 | -0.298 | 0.704 | -- | -- | -- | 0.189 | 21.8 | -- | -- | -- | -- |
| 114.71 | 0.501 | 8.6 | -0.281 | -- | 0.317 | -- | -- | 0.172 | -- | 16.74 | 7422 | -- | -- |
| 85.58 | 0.431 | 8.59 | -- | 0.88 | 0.557 | -- | -- | 0.297 | 21.9 | 19.96 | 1199 | -- | -- |
| 123.4 | 0.519 | 8.6 | -0.29 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 96.14 | 0.459 | 8.61 | -- | 0.703 | -- | -- | -- | 0.222 | 21.8 | -- | -- | -- | -- |
| 114.86 | 0.501 | 8.59 | -- | -- | 0.331 | -- | -- | 0.212 | -- | 11.71 | 7381 | -- | -- |
| 125.63 | 0.523 | 8.59 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.56 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 10 |
| 2 | 75.80 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 5 |
| 6 | 76.25 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 2 |
| 8 | 76.57 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 24 | 77.89 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 3 |
| 26 | 78.19 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 12 |
| 51 | 78.84 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 53 | 78.85 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 57 | 78.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 61 | 79.07 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 62 | 79.11 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 68 | 79.29 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 109 | 80.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 123 | 80.19 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 12 |
| 127 | 80.23 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 145 | 80.49 | radiation | 10 | 720 | < th | dose independent | sin | 15 | NA |
| 154 | 80.58 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 7 |
| 157 | 80.60 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 166 | 80.68 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 175 | 80.80 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 183 | 80.86 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 226 | 81.17 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 21 |
| 234 | 81.20 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 23 |
| 251 | 81.29 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 15 |
| 280 | 81.46 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 19 | 4 |
| 325 | 81.65 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 328 | 81.67 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 17 |
| 353 | 81.75 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 368 | 81.80 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 19 |
| 377 | 81.84 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 12 |
| 381 | 81.85 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 22 |
| 395 | 81.91 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 408 | 81.96 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 409 | 81.96 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 6 |
| 411 | 81.96 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 20 |
| 434 | 82.01 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 1 |
| 442 | 82.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 472 | 82.09 | radiation | 10 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 505 | 82.15 | temperature | 30 | 720 | < th | dose independent | sin | 14 | NA |
| 533 | 82.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 535 | 82.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 544 | 82.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 628 | 82.36 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 12 |
| 664 | 82.42 | wind | 1 | 30 | > th | dose independent | rect. | 16 | 17 |
| 666 | 82.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 681 | 82.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 686 | 82.46 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 15 |
| 695 | 82.48 | radiation | 10 | 720 | < th | dose dependent | sin | 17 | NA |
| 705 | 82.50 | wind | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 711 | 82.51 | wind | 5 | 10 | < th | dose independent | rect. | 17 | 16 |
| 716 | 82.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 770 | 82.59 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 782 | 82.62 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 795 | 82.64 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 7 |
| 799 | 82.64 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 21 |
| 805 | 82.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 816 | 82.67 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 852 | 82.71 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 16 |
| 853 | 82.71 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 17 |
| 865 | 82.73 | wind | 5 | 270 | < th | dose independent | rect. | 3 | 3 |
| 871 | 82.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 873 | 82.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 874 | 82.74 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 887 | 82.75 | wind | 1 | 30 | > th | dose independent | sin | 13 | NA |
| 901 | 82.76 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 928 | 82.79 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 953 | 82.82 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 955 | 82.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 969 | 82.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 970 | 82.83 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 12 |