Os06g0605100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os06g0605100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 415.63 | 0.958 | 6.51 | -2.05 | 1.11 | -2.85 | 0.783 | -3.82 | 0.545 | 15.3 | 9.239 | 281 | 16.8 | 19.2 |
| 429.36 | 0.965 | 6.49 | -1.79 | 1.08 | -2.75 | 0.971 | -- | 0.595 | 15.2 | 8.857 | 287 | 16.7 | 19.3 |
| 417.32 | 0.951 | 6.51 | -2.04 | 1.05 | -2.79 | -- | -3.75 | 0.562 | 15.3 | 8.406 | 287 | 16.8 | 19.2 |
| 433.86 | 0.97 | 6.46 | -1.7 | 1.15 | -2.79 | -- | -- | 0.638 | 15.6 | 8.939 | 287 | 16.6 | 19.4 |
| 433.01 | 0.969 | 6.5 | -1.95 | -- | -3.23 | -- | -2.4 | 0.643 | -- | -0.4143 | 383 | 16 | 19.4 |
| 548.56 | 1.1 | 6.54 | -2.08 | 2.01 | -- | 1.43 | -- | 0.415 | 16.6 | -- | -- | -- | -- |
| 553.98 | 1.1 | 6.53 | -2.07 | 2.02 | -- | -- | -- | 0.423 | 16.6 | -- | -- | -- | -- |
| 446.62 | 0.984 | 6.45 | -1.66 | -- | -3.53 | -- | -- | 0.703 | -- | 0.6813 | 389 | 15.8 | 19.4 |
| 500.82 | 1.04 | 6.41 | -- | 0.916 | -3.43 | -- | -- | 0.916 | 15.1 | 8.437 | 335 | 16.3 | 19.6 |
| 771.02 | 1.3 | 6.52 | -2.15 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 667.16 | 1.21 | 6.48 | -- | 2.06 | -- | -- | -- | 0.654 | 16.6 | -- | -- | -- | -- |
| 512 | 1.05 | 6.37 | -- | -- | -3.88 | -- | -- | 1.02 | -- | 7.191 | 408 | 15.9 | 18.9 |
| 892.96 | 1.39 | 6.46 | -- | -- | -- | -- | -- | 0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 416.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 16 | 434.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 28 | 438.98 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 58 | 449.19 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 17 |
| 91 | 455.70 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 101 | 457.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 137 | 461.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 138 | 461.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 156 | 463.50 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 163 | 463.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 5 |
| 164 | 463.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 172 | 464.40 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 174 | 464.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 176 | 464.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 178 | 465.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 180 | 465.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 185 | 465.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 196 | 465.76 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 17 |
| 197 | 465.76 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 17 |
| 198 | 465.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 203 | 466.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 205 | 466.30 | radiation | 20.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 238 | 467.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 18 | 18 |
| 241 | 467.33 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 6 |
| 259 | 467.70 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 266 | 467.89 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 18 | 6 |
| 267 | 467.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 270 | 467.99 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 276 | 468.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 278 | 468.22 | wind | 1.0 | 90 | > th | dose independent | rect. | 12 | 6 |
| 304 | 468.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 328 | 469.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 331 | 469.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 338 | 469.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 342 | 469.45 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 351 | 469.73 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 362 | 469.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 363 | 469.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 366 | 469.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 392 | 470.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 405 | 471.09 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 4 |
| 413 | 471.29 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 467 | 472.43 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 18 | 7 |
| 515 | 473.21 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 540 | 473.70 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 6 |
| 550 | 473.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 20 |
| 568 | 474.04 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 613 | 474.71 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 17 |
| 623 | 474.92 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 658 | 475.47 | radiation | 1.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 664 | 475.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 665 | 475.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 718 | 476.28 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 721 | 476.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 724 | 476.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 785 | 477.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 810 | 477.78 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 18 | 6 |
| 843 | 478.55 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 13 |
| 852 | 478.70 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 855 | 478.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 856 | 478.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 857 | 478.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 868 | 479.01 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 871 | 479.06 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 5 |
| 880 | 479.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 883 | 479.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 9 |
| 885 | 479.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 895 | 479.45 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 902 | 479.53 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 932 | 480.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 19 |