Os06g0604300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phospholipase D.
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Os06g0604300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phospholipase D.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.65 | 0.773 | 11.8 | 1.76 | 1.24 | -5.09 | 1.44 | -7.53 | 0.545 | 9.57 | 0.998 | 1462 | -- | -- |
| 299.98 | 0.807 | 11.8 | 1.03 | 1.11 | -3.76 | 2.09 | -- | 0.505 | 8.52 | 1.036 | 1512 | -- | -- |
| 277.2 | 0.775 | 11.8 | 1.81 | 1.12 | -5.14 | -- | -7.62 | 0.558 | 9.35 | 0.9847 | 1475 | -- | -- |
| 297.65 | 0.804 | 11.9 | 1.21 | 0.987 | -3.9 | -- | -- | 0.383 | 8.02 | 2.402 | 1524 | -- | -- |
| 325.42 | 0.84 | 11.8 | 1.72 | -- | -5.68 | -- | -7.62 | 0.469 | -- | 1.084 | 1513 | -- | -- |
| 433.61 | 0.976 | 11.8 | 1.82 | 1.49 | -- | 1.49 | -- | 0.881 | 9.8 | -- | -- | -- | -- |
| 441.87 | 0.984 | 11.8 | 1.88 | 1.48 | -- | -- | -- | 0.885 | 9.95 | -- | -- | -- | -- |
| 345.15 | 0.865 | 11.9 | 1.15 | -- | -4.31 | -- | -- | 0.321 | -- | 2.379 | 1534 | -- | -- |
| 333.14 | 0.85 | 11.9 | -- | 0.967 | -4.35 | -- | -- | 0.265 | 8.07 | 2.106 | 1513 | -- | -- |
| 572.83 | 1.12 | 11.8 | 1.86 | -- | -- | -- | -- | 0.885 | -- | -- | -- | -- | -- |
| 534.94 | 1.08 | 11.8 | -- | 1.47 | -- | -- | -- | 0.676 | 9.85 | -- | -- | -- | -- |
| 376.73 | 0.904 | 12 | -- | -- | -4.81 | -- | -- | 0.159 | -- | 2.111 | 1524 | -- | -- |
| 664.28 | 1.2 | 11.9 | -- | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 262.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 6 | 263.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 7 | 264.00 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 10 |
| 8 | 264.02 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 15 | 264.10 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 18 | 264.17 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 20 | 264.20 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 29 | 264.34 | temperature | 25 | 14400 | > th | dose dependent | sin | 16 | NA |
| 43 | 264.48 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 48 | 264.53 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 52 | 264.55 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 70 | 264.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 197 | 265.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 205 | 265.40 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 214 | 265.45 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 272 | 265.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 298 | 266.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 341 | 266.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 470 | 266.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 483 | 267.13 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 546 | 267.35 | temperature | 25 | 14400 | < th | dose independent | sin | 12 | NA |
| 555 | 267.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 579 | 267.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 631 | 267.86 | temperature | 25 | 14400 | > th | dose independent | sin | 13 | NA |
| 651 | 268.07 | temperature | 30 | 14400 | < th | dose independent | sin | 16 | NA |
| 728 | 268.76 | temperature | 30 | 14400 | > th | dose independent | sin | 16 | NA |
| 739 | 268.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 764 | 269.10 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 801 | 269.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 804 | 269.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 919 | 270.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 920 | 270.08 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 926 | 270.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 941 | 270.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 952 | 270.18 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 953 | 270.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 5 |