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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0604200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipase D.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.93 (0.0503) R2 : 0.486
β1 : 1.8 (0.184) R2dD : 0.11 R2D : 0.13
β2 : 1.43 (0.128) R2dC : 0.155 R2C : 0.0467
β3 : 2.81 (0.219) R2dE : 0.229 R2E : 0.133
β4 : 3.95 (0.492) R2dD*C : 0.0747 R2D*C : 0.0805
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0859 (0.112) R2dN8 : 0.000922 R2N8 : 0.00439
σ : 0.93
deviance : 398.71
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_____
C
peak time of C : 9.35
E
wheather : radiation
threshold : 1.13
memory length : 3976
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.28
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.13 0.939 5.93 1.8 1.43 2.79 3.97 0.0973 0.0918 9.44 1.134 3994 5.33 --
398.71 0.93 5.93 1.8 1.43 2.81 3.95 -- 0.0859 9.35 1.13 3976 5.28 --
453.06 0.991 5.94 1.73 1.5 3.05 -- -0.888 0.0311 8.76 1.09 3983 4.95 --
454.8 0.993 5.93 1.85 1.47 2.99 -- -- 0.0632 8.6 1.09 3959 4.9 --
475.82 1.02 5.89 1.81 -- 2.92 -- -0.81 0.11 -- 1.005 4773 5.03 --
538.68 1.09 5.84 1.99 0.996 -- 3.52 -- 0.559 10.4 -- -- -- --
588.57 1.14 5.83 2.14 0.977 -- -- -- 0.572 10.9 -- -- -- --
459.09 0.998 5.96 1.9 -- 3.04 -- -- 0.117 -- 1.179 4759 4.74 --
538.37 1.08 6 -- 1.55 3.37 -- -- -0.165 8.35 1.03 3957 4.64 --
647.8 1.19 5.86 2.12 -- -- -- -- 0.565 -- -- -- -- --
709.23 1.25 5.89 -- 0.96 -- -- -- 0.333 10.7 -- -- -- --
529.51 1.07 6.01 -- -- 3.31 -- -- -0.206 -- 0.7018 4695 4.62 --
766.23 1.29 5.91 -- -- -- -- -- 0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 426.11 radiation 1 4320 > th dose independent sin 11 NA
2 426.16 radiation 1 1440 < th dose dependent sin 15 NA
3 426.20 radiation 1 1440 < th dose dependent rect. 8 22
6 426.45 radiation 1 4320 < th dose independent sin 11 NA
8 426.62 radiation 1 4320 > th dose independent rect. 16 15
10 426.68 radiation 1 4320 < th dose independent rect. 16 15
17 427.08 radiation 1 4320 < th dose independent rect. 14 17
21 427.24 wind 5 43200 > th dose independent rect. 20 1
30 427.76 radiation 1 1440 < th dose dependent rect. 8 12
36 427.87 radiation 1 1440 < th dose dependent rect. 8 14
38 427.90 radiation 1 4320 > th dose independent rect. 16 18
40 427.92 radiation 1 4320 < th dose independent rect. 8 23
45 427.97 radiation 1 1440 < th dose dependent rect. 8 16
49 428.00 radiation 1 4320 < th dose independent rect. 16 18
56 428.09 radiation 1 4320 < th dose independent rect. 14 20
58 428.12 wind 5 43200 < th dose independent rect. 20 1
68 428.16 radiation 1 4320 > th dose independent rect. 14 20
80 428.27 radiation 1 4320 > th dose independent rect. 9 22
85 428.30 radiation 1 1440 < th dose dependent rect. 13 7
95 428.42 radiation 1 1440 < th dose dependent rect. 13 9
109 428.52 radiation 1 1440 < th dose dependent rect. 13 11
110 428.53 radiation 1 1440 < th dose dependent rect. 13 15
116 428.56 radiation 1 4320 < th dose independent rect. 16 23
120 428.58 radiation 1 4320 < th dose independent rect. 5 13
152 428.77 radiation 1 4320 < th dose independent rect. 1 17
156 428.79 radiation 1 1440 < th dose dependent rect. 5 15
157 428.80 radiation 1 4320 < th dose independent rect. 5 15
160 428.81 radiation 1 4320 < th dose independent rect. 5 17
165 428.83 radiation 1 4320 < th dose independent rect. 5 19
173 428.86 radiation 1 1440 < th dose dependent rect. 5 17
178 428.89 radiation 1 4320 < th dose independent rect. 1 19
180 428.89 radiation 1 4320 < th dose independent rect. 5 23
185 428.92 radiation 1 4320 < th dose independent rect. 1 23
187 428.92 radiation 1 1440 < th dose dependent rect. 5 19
192 428.94 radiation 1 4320 < th dose independent rect. 23 19
202 428.96 radiation 1 4320 < th dose independent rect. 21 21
204 428.97 radiation 1 4320 > th dose independent rect. 5 14
219 428.98 radiation 1 4320 < th dose independent rect. 19 23
221 428.98 radiation 1 1440 < th dose dependent rect. 5 23
228 429.01 radiation 1 4320 < th dose independent rect. 5 2
256 429.10 radiation 1 4320 < th dose independent no NA NA
285 429.31 radiation 1 4320 > th dose independent no NA NA
332 429.34 radiation 1 4320 > th dose independent rect. 18 23
338 429.41 radiation 1 1440 < th dose dependent rect. 1 19
346 429.48 radiation 1 1440 < th dose dependent rect. 1 21
352 429.54 radiation 1 1440 < th dose dependent rect. 1 23
358 429.59 radiation 1 4320 > th dose independent rect. 5 2
376 429.71 radiation 1 1440 < th dose dependent rect. 23 21
385 429.78 radiation 1 1440 < th dose dependent rect. 21 23
386 429.78 radiation 1 1440 < th dose dependent rect. 23 23
398 429.86 radiation 1 1440 < th dose dependent no NA NA
413 430.01 radiation 1 1440 < th dose dependent rect. 12 23
449 430.53 radiation 1 1440 < th dose dependent rect. 18 2
480 431.09 radiation 1 1440 < th dose dependent rect. 17 23
481 431.10 radiation 1 4320 < th dose dependent rect. 5 1
489 431.33 radiation 1 1440 < th dose dependent rect. 18 6
497 431.43 humidity 90 43200 > th dose dependent rect. 21 1
504 431.55 radiation 1 4320 < th dose independent sin 1 NA
533 431.98 radiation 1 1440 < th dose dependent rect. 18 10
534 432.00 radiation 1 4320 > th dose independent sin 1 NA
537 432.02 radiation 1 4320 < th dose independent rect. 1 6
551 432.22 humidity 80 43200 > th dose independent rect. 12 1
564 432.47 radiation 1 4320 < th dose independent rect. 23 8
567 432.53 radiation 1 4320 < th dose independent rect. 21 10
621 433.36 humidity 90 43200 < th dose independent rect. 20 2
625 433.40 humidity 90 43200 > th dose independent rect. 21 1
626 433.41 humidity 80 43200 < th dose independent rect. 12 1
675 433.71 radiation 1 4320 < th dose dependent rect. 1 5
741 434.24 radiation 1 4320 < th dose independent rect. 5 5
743 434.27 radiation 1 4320 < th dose dependent sin 11 NA
745 434.32 radiation 1 4320 < th dose dependent rect. 23 7
749 434.36 radiation 1 4320 > th dose independent rect. 5 5
751 434.38 temperature 30 14400 < th dose independent rect. 15 2
784 434.80 temperature 30 14400 > th dose independent rect. 15 2
819 435.35 humidity 90 43200 > th dose independent rect. 18 4
926 435.99 temperature 25 14400 > th dose dependent rect. 17 1
933 436.02 temperature 30 14400 < th dose independent rect. 14 17
943 436.05 temperature 30 14400 < th dose independent rect. 14 6
954 436.07 temperature 30 14400 < th dose independent rect. 14 10
960 436.09 temperature 30 14400 > th dose independent rect. 14 5
975 436.10 temperature 30 14400 < th dose independent rect. 14 12
984 436.13 radiation 1 4320 < th dose independent rect. 5 8
995 436.16 radiation 1 4320 < th dose independent rect. 1 9