Os06g0604000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene response factor 1.
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Os06g0604000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene response factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.59 | 0.417 | 3.31 | 0.147 | 0.231 | -0.65 | -0.353 | 9.32 | 0.0177 | 6.69 | 0.4063 | 8 | -- | -- |
| 78.74 | 0.413 | 3.32 | 0.135 | 0.226 | 2.02 | -0.368 | -- | 0.0184 | 6.69 | 0.3818 | 2 | -- | -- |
| 78.87 | 0.414 | 3.31 | 0.145 | 0.231 | -1.31 | -- | 11.6 | 0.0187 | 7.04 | 0.4263 | 8 | -- | -- |
| 79.02 | 0.414 | 3.32 | 0.125 | 0.227 | 2.01 | -- | -- | 0.0203 | 7.15 | 0.3002 | 2 | -- | -- |
| 81.63 | 0.421 | 3.32 | 0.152 | -- | -1.3 | -- | 11.8 | 0.0208 | -- | 0.4382 | 5 | -- | -- |
| 82.87 | 0.427 | 3.32 | 0.154 | 0.238 | -- | -0.295 | -- | 0.0149 | 6.69 | -- | -- | -- | -- |
| 83.08 | 0.427 | 3.32 | 0.149 | 0.237 | -- | -- | -- | 0.016 | 6.92 | -- | -- | -- | -- |
| 81.71 | 0.421 | 3.32 | 0.131 | -- | 2.08 | -- | -- | 0.0241 | -- | 0.4288 | 2 | -- | -- |
| 79.42 | 0.415 | 3.32 | -- | 0.228 | 2.04 | -- | -- | 0.00676 | 7.12 | 0.231 | 2 | -- | -- |
| 86.02 | 0.433 | 3.32 | 0.154 | -- | -- | -- | -- | 0.0204 | -- | -- | -- | -- | -- |
| 83.67 | 0.428 | 3.32 | -- | 0.238 | -- | -- | -- | -0.000663 | 6.88 | -- | -- | -- | -- |
| 82.16 | 0.422 | 3.33 | -- | -- | 2.11 | -- | -- | 0.00999 | -- | 0.3801 | 2 | -- | -- |
| 86.64 | 0.434 | 3.33 | -- | -- | -- | -- | -- | 0.00329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.04 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 2 |
| 3 | 75.12 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 75.18 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 6 | 75.21 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 11 | 75.33 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 28 | 77.07 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 23 |
| 29 | 77.07 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 30 | 77.13 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 2 |
| 33 | 77.17 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 43 | 77.68 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 46 | 77.75 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 48 | 77.80 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 49 | 77.80 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 50 | 77.80 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 55 | 77.88 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 59 | 77.92 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 61 | 77.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 64 | 77.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 68 | 77.92 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 77 | 77.92 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 78 | 77.92 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 79 | 77.92 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 88 | 77.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 95 | 77.95 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 97 | 77.95 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 98 | 77.95 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 102 | 77.95 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 103 | 77.95 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 104 | 77.95 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 106 | 77.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 111 | 77.95 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 112 | 77.95 | wind | 7.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 114 | 77.95 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 123 | 78.01 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 125 | 78.02 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 129 | 78.06 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 132 | 78.06 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 137 | 78.08 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 182 | 78.35 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 190 | 78.42 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 192 | 78.45 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 15 |
| 200 | 78.48 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 208 | 78.50 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 210 | 78.51 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 23 | 19 |
| 218 | 78.54 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 230 | 78.56 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 236 | 78.60 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 239 | 78.60 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 244 | 78.62 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 21 |
| 251 | 78.64 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 255 | 78.65 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 264 | 78.65 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 1 | NA |
| 276 | 78.67 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 280 | 78.68 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 294 | 78.69 | precipitation | 0.1 | 10 | < th | dose independent | sin | 5 | NA |
| 297 | 78.69 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 5 | NA |
| 306 | 78.70 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 2 |
| 364 | 78.77 | precipitation | 0.1 | 10 | > th | dose independent | sin | 1 | NA |
| 464 | 78.83 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 530 | 78.86 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 7 | NA |
| 554 | 78.86 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 12 |
| 756 | 78.95 | precipitation | 0.1 | 10 | > th | dose dependent | no | NA | NA |
| 812 | 78.96 | wind | 5.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 814 | 78.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 867 | 78.98 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 870 | 78.99 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 889 | 79.00 | wind | 3.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 890 | 79.00 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 917 | 79.03 | wind | 5.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 925 | 79.04 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 952 | 79.07 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 970 | 79.10 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 3 |