Os06g0602800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 14 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0602800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Glycosyl transferase, family 14 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.63 | 0.233 | 12 | 0.963 | 0.418 | 0.489 | 0.302 | -0.0622 | 0.528 | 2.31 | 0.3364 | 1433 | -- | -- |
| 24.63 | 0.231 | 12 | 0.96 | 0.417 | 0.494 | 0.305 | -- | 0.531 | 2.29 | 0.3301 | 1430 | -- | -- |
| 24.95 | 0.233 | 12 | 0.957 | 0.418 | 0.47 | -- | -0.123 | 0.528 | 2.27 | 0.3352 | 1426 | -- | -- |
| 24.97 | 0.233 | 12 | 0.954 | 0.417 | 0.495 | -- | -- | 0.526 | 2.32 | 0.33 | 1431 | -- | -- |
| 25.62 | 0.236 | 12 | 0.993 | -- | 0.753 | -- | 0.0209 | 0.523 | -- | 0.4209 | 1780 | -- | -- |
| 27.45 | 0.246 | 12 | 0.835 | 0.412 | -- | 0.251 | -- | 0.463 | 2.34 | -- | -- | -- | -- |
| 27.68 | 0.246 | 12 | 0.828 | 0.412 | -- | -- | -- | 0.461 | 2.34 | -- | -- | -- | -- |
| 25.53 | 0.235 | 12 | 0.952 | -- | 0.796 | -- | -- | 0.523 | -- | 0.42 | 1767 | -- | -- |
| 43.18 | 0.306 | 12 | -- | 0.43 | 0.349 | -- | -- | 0.486 | 2.41 | 8.98 | 7340 | -- | -- |
| 37.76 | 0.287 | 12 | 0.846 | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
| 45.76 | 0.316 | 12 | -- | 0.428 | -- | -- | -- | 0.369 | 2.38 | -- | -- | -- | -- |
| 48.61 | 0.325 | 12 | -- | -- | 0.772 | -- | -- | 0.483 | -- | 1.625 | 1792 | -- | -- |
| 56.62 | 0.351 | 12 | -- | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.25 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 2 | 22.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 5 | 22.51 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 6 | 22.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 8 | 22.60 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 9 | 22.60 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 10 | 22.61 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 18 | 22.71 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 19 | 22.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 25 | 22.77 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 38 | 22.86 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 57 | 22.97 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 58 | 22.97 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 74 | 22.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 75 | 22.98 | atmosphere | 1010.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 79 | 22.98 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 95 | 22.98 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 140 | 22.99 | atmosphere | 1010.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 192 | 23.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 198 | 23.00 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 199 | 23.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 258 | 23.01 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 319 | 23.01 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 14 | 22 |
| 340 | 23.02 | atmosphere | 1010.0 | 43200 | < th | dose dependent | no | NA | NA |
| 419 | 23.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 624 | 23.08 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 625 | 23.08 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 628 | 23.08 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 668 | 23.09 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 737 | 23.10 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 780 | 23.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 851 | 23.12 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |