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Os06g0602400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3) (mDEAD3) (Embryonic RNA helicase) (D1PAS1 related sequence 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.45 (0.041) R2 : 0.775
β1 : 6.97 (0.198) R2dD : 1.26 R2D : 0.548
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.958 (0.0875) R2dE : 0.0709 R2E : -0.056
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.78 (0.32) R2dD*E : 0.133 R2D*E : -0.398
γ1 : 0.728 (0.0942) R2dN8 : 0.052 R2N8 : -0.1
σ : 0.719
deviance : 238.07
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.93
memory length : 1372
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 0.983

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.7 0.707 6.44 6.99 0.456 0.963 0.166 -3.84 0.731 8.02 20 1372 5.01 1
297.9 0.804 6.58 5.38 0.411 1.16 0.497 -- 0.342 7.21 19.83 1470 5.1 1.57
226.77 0.701 6.44 6.99 0.458 0.964 -- -3.83 0.732 7.99 20 1370 5.02 1
294.47 0.799 6.59 5.47 0.382 1.29 -- -- 0.344 7.68 19.85 1467 5.28 2.33
238.07 0.719 6.45 6.97 -- 0.958 -- -3.78 0.728 -- 19.93 1372 5.02 0.983
345.93 0.872 6.66 5.06 0.418 -- 0.486 -- 0.0281 8.3 -- -- -- --
346.67 0.872 6.66 5.07 0.417 -- -- -- 0.0281 8.34 -- -- -- --
299.7 0.806 6.6 5.57 -- 1.74 -- -- 0.339 -- 20.17 1534 5.45 2.38
1016.85 1.49 6.78 -- 0.394 1.15 -- -- -0.516 7.77 19.85 1467 5.28 2.33
356.33 0.882 6.67 5.07 -- -- -- -- 0.0325 -- -- -- -- --
1024.48 1.5 6.78 -- 0.452 -- -- -- -0.537 7.51 -- -- -- --
1025.07 1.5 6.79 -- -- 1.32 -- -- -0.508 -- 20.17 1534 5.45 2.38
1035.39 1.5 6.79 -- -- -- -- -- -0.53 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.27 temperature 20.0 1440 < th dose independent rect. 5 1
2 230.45 humidity 90.0 14400 > th dose independent rect. 21 7
3 231.08 humidity 90.0 14400 > th dose independent rect. 22 5
4 231.40 temperature 20.0 1440 > th dose independent rect. 5 1
17 234.53 wind 1.0 43200 > th dose independent rect. 2 1
18 234.62 humidity 90.0 14400 < th dose independent rect. 21 7
19 234.63 humidity 90.0 14400 < th dose independent rect. 22 5
40 236.67 humidity 90.0 14400 < th dose independent rect. 23 2
53 237.35 wind 1.0 43200 < th dose independent rect. 2 1
68 238.60 humidity 90.0 14400 > th dose independent sin 11 NA
92 239.74 temperature 20.0 1440 < th dose independent rect. 22 10
93 239.76 temperature 20.0 1440 > th dose independent rect. 22 10
118 240.77 radiation 1.0 14400 < th dose dependent rect. 24 7
126 240.86 radiation 1.0 14400 < th dose dependent rect. 4 3
143 241.52 wind 3.0 43200 > th dose independent rect. 13 1
184 242.43 radiation 1.0 14400 < th dose independent rect. 18 12
188 242.57 wind 3.0 43200 < th dose independent rect. 13 1
209 243.01 humidity 90.0 14400 > th dose dependent rect. 23 2
239 244.03 radiation 1.0 43200 > th dose independent rect. 18 11
248 244.14 humidity 90.0 14400 > th dose dependent rect. 22 4
252 244.28 wind 1.0 43200 < th dose dependent rect. 2 1
258 244.46 wind 3.0 43200 > th dose independent rect. 12 3
265 244.74 temperature 20.0 1440 > th dose independent sin 9 NA
273 244.85 humidity 90.0 14400 < th dose independent sin 12 NA
279 244.97 humidity 90.0 43200 < th dose independent rect. 9 1
284 245.04 temperature 10.0 43200 < th dose dependent rect. 3 1
286 245.05 radiation 1.0 14400 < th dose dependent sin 10 NA
291 245.11 temperature 20.0 1440 < th dose independent sin 9 NA
306 245.39 humidity 80.0 43200 > th dose dependent rect. 9 2
312 245.44 radiation 1.0 14400 > th dose independent rect. 18 1
326 245.47 wind 3.0 43200 > th dose independent rect. 11 5
331 245.51 humidity 90.0 43200 < th dose independent rect. 8 7
337 245.60 temperature 20.0 4320 < th dose independent rect. 22 1
352 245.88 humidity 90.0 43200 > th dose independent rect. 8 7
357 245.94 wind 3.0 43200 < th dose independent rect. 11 5
358 245.96 precipitation 0.1 43200 < th dose independent rect. 5 2
359 245.96 precipitation 0.1 43200 < th dose dependent rect. 5 2
361 245.97 precipitation 0.1 43200 > th dose dependent rect. 5 2
362 246.00 humidity 90.0 43200 < th dose independent rect. 8 4
367 246.04 radiation 1.0 43200 > th dose independent rect. 6 5
368 246.04 radiation 1.0 43200 < th dose independent rect. 6 5
370 246.06 humidity 90.0 43200 < th dose independent rect. 5 9
372 246.10 precipitation 0.1 43200 > th dose independent rect. 5 2
384 246.18 humidity 90.0 43200 > th dose dependent rect. 7 8
390 246.23 humidity 90.0 43200 > th dose independent rect. 8 2
398 246.27 humidity 90.0 14400 > th dose dependent rect. 23 16
402 246.31 humidity 90.0 14400 > th dose dependent rect. 22 11
404 246.34 temperature 20.0 4320 > th dose independent rect. 22 1
407 246.36 humidity 90.0 43200 < th dose independent rect. 5 11
423 246.45 wind 5.0 43200 < th dose dependent rect. 13 2
424 246.46 humidity 90.0 43200 > th dose independent rect. 7 5
452 246.64 wind 5.0 43200 < th dose dependent rect. 12 4
471 246.87 temperature 25.0 43200 < th dose dependent rect. 2 1
486 246.96 humidity 80.0 43200 > th dose dependent rect. 8 4
496 247.01 temperature 10.0 43200 > th dose dependent rect. 2 1
511 247.13 humidity 90.0 43200 > th dose independent rect. 5 9
529 247.20 radiation 1.0 43200 < th dose independent rect. 18 8
535 247.21 radiation 1.0 14400 > th dose independent rect. 18 14
546 247.25 radiation 1.0 43200 < th dose independent rect. 18 1
564 247.30 humidity 90.0 14400 > th dose dependent rect. 13 18
686 247.74 precipitation 0.1 43200 < th dose independent rect. 4 6
687 247.74 precipitation 0.1 43200 < th dose dependent rect. 4 6
751 247.87 precipitation 0.1 43200 > th dose independent rect. 4 6
786 247.94 humidity 90.0 14400 > th dose dependent sin 7 NA
816 248.01 temperature 20.0 43200 < th dose independent rect. 6 2
903 248.14 temperature 25.0 43200 < th dose dependent sin 9 NA
908 248.15 temperature 10.0 43200 > th dose independent rect. 3 1
919 248.17 temperature 20.0 43200 > th dose independent rect. 6 2
936 248.19 temperature 20.0 43200 > th dose independent rect. 3 9
959 248.22 temperature 20.0 43200 < th dose independent rect. 3 9
983 248.25 temperature 10.0 43200 < th dose independent rect. 3 1
984 248.25 temperature 20.0 43200 > th dose independent rect. 4 7
990 248.26 temperature 10.0 43200 > th dose dependent sin 8 NA