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Os06g0601500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.53 (0.0454) R2 : 0.808
β1 : -2.18 (0.167) R2dD : 0.075 R2D : 0.0466
β2 : 4.08 (0.119) R2dC : 0.517 R2C : 0.556
β3 : -1.45 (0.0966) R2dE : 0.0976 R2E : 0.18
β4 : 3.08 (0.523) R2dD*C : 0.0155 R2D*C : 0.0085
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.09 (0.0973) R2dN8 : 0.0713 R2N8 : 0.0355
σ : 0.848
deviance : 331.42
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C
peak time of C : 7.18
E
wheather : temperature
threshold : 20.5
memory length : 95
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 8.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.55 0.854 8.54 -2.11 4.09 -1.41 3.38 0.755 -1.09 7.22 20.56 96 19.2 8.83
331.42 0.848 8.53 -2.18 4.08 -1.45 3.08 -- -1.09 7.18 20.5 95 19.4 8.58
357.77 0.881 8.53 -2.09 4.11 -1.39 -- 0.138 -1.09 7.23 20.6 86 19.5 8.54
357.5 0.881 8.54 -2.11 4.09 -1.42 -- -- -1.1 7.17 20.6 86 19.4 8.58
930.36 1.43 8.59 -1.91 -- -2.54 -- -0.585 -0.823 -- 19.23 33 18.5 8.88
412.18 0.952 8.56 -2.34 4.45 -- 3.07 -- -1.23 8.16 -- -- -- --
440.92 0.983 8.56 -2.25 4.45 -- -- -- -1.23 8.15 -- -- -- --
510.71 1.05 8.62 -1.52 -- -3.1 -- -- -0.738 -- 19.33 148 14.5 11.2
477.66 1.02 8.51 -- 4.06 -1.5 -- -- -0.991 7.09 20.5 106 19.3 8.69
1528.86 1.83 8.67 -2.21 -- -- -- -- -1.18 -- -- -- -- --
574.04 1.12 8.5 -- 4.43 -- -- -- -0.978 8.19 -- -- -- --
502.47 1.04 8.64 -- -- -3.49 -- -- -0.586 -- 19.46 246 12.7 12.5
1657.82 1.9 8.62 -- -- -- -- -- -0.93 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 334.44 temperature 20 90 > th dose independent rect. 19 9
6 339.26 temperature 20 270 > th dose independent rect. 5 22
7 341.63 temperature 20 90 > th dose independent rect. 19 22
9 341.82 temperature 20 90 > th dose independent rect. 7 21
14 344.24 temperature 20 90 > th dose independent sin 12 NA
29 346.18 temperature 20 10 > th dose independent rect. 20 21
39 347.27 temperature 20 90 < th dose independent rect. 19 10
40 347.32 temperature 20 90 < th dose independent sin 12 NA
48 347.99 temperature 20 720 > th dose independent rect. 15 11
57 348.69 temperature 20 10 > th dose independent sin 11 NA
58 348.83 temperature 20 90 < th dose independent rect. 19 20
61 348.94 temperature 20 90 < th dose independent rect. 11 18
64 348.97 temperature 20 90 < th dose independent rect. 9 20
71 349.20 temperature 20 90 < th dose independent rect. 19 17
109 350.02 temperature 20 30 > th dose independent rect. 15 13
148 351.13 temperature 20 720 > th dose independent rect. 9 17
149 351.15 temperature 20 10 < th dose independent rect. 19 17
153 351.21 temperature 20 10 < th dose independent sin 11 NA
155 351.23 temperature 20 90 > th dose independent no NA NA
158 351.30 temperature 20 90 < th dose independent rect. 15 14
209 351.92 temperature 20 90 < th dose dependent rect. 11 18
218 352.05 temperature 20 90 < th dose independent rect. 11 23
224 352.13 temperature 20 90 < th dose independent rect. 15 21
233 352.19 wind 3 14400 < th dose dependent rect. 1 3
238 352.24 humidity 50 720 > th dose dependent rect. 14 13
261 352.44 temperature 20 90 < th dose independent no NA NA
267 352.52 temperature 20 10 < th dose independent rect. 19 21
268 352.53 temperature 20 90 < th dose dependent rect. 18 17
311 352.91 temperature 20 720 > th dose independent rect. 11 15
327 353.05 temperature 20 90 < th dose dependent rect. 18 11
329 353.08 temperature 20 10 < th dose independent rect. 19 11
332 353.09 wind 3 14400 < th dose dependent rect. 23 5
357 353.28 temperature 20 4320 < th dose independent rect. 20 1
366 353.36 temperature 20 90 < th dose independent rect. 1 23
374 353.44 temperature 20 90 < th dose dependent rect. 7 22
397 353.58 temperature 20 90 < th dose dependent rect. 12 23
401 353.61 temperature 20 90 < th dose dependent rect. 14 21
408 353.66 temperature 20 1440 < th dose independent rect. 20 8
419 353.71 temperature 20 1440 > th dose independent rect. 23 3
465 354.04 temperature 20 270 < th dose dependent sin 16 NA
469 354.07 temperature 20 90 > th dose independent rect. 20 15
483 354.15 temperature 20 90 < th dose dependent rect. 14 15
485 354.15 temperature 20 10 < th dose dependent rect. 19 17
497 354.26 temperature 20 30 < th dose dependent rect. 19 22
505 354.30 temperature 20 90 < th dose dependent sin 12 NA
517 354.35 temperature 20 10 < th dose independent rect. 14 22
527 354.39 humidity 90 1440 < th dose dependent rect. 23 17
537 354.43 temperature 20 10 < th dose dependent rect. 12 23
607 354.75 temperature 20 10 < th dose dependent rect. 15 21
621 354.81 temperature 20 30 < th dose dependent rect. 19 13
641 354.89 temperature 20 10 < th dose dependent rect. 5 23
647 354.90 temperature 20 10 < th dose independent rect. 8 22
649 354.90 temperature 20 10 < th dose dependent rect. 12 18
668 354.97 humidity 70 1440 > th dose independent rect. 11 2
689 355.03 temperature 20 1440 < th dose independent rect. 23 3
704 355.10 temperature 20 10 > th dose independent no NA NA
725 355.18 temperature 20 30 < th dose dependent no NA NA
734 355.18 temperature 20 30 < th dose dependent rect. 9 23
747 355.22 temperature 20 30 < th dose dependent rect. 21 23
754 355.25 temperature 20 30 < th dose dependent rect. 3 23
763 355.28 temperature 20 30 < th dose dependent rect. 23 23
784 355.34 temperature 20 90 > th dose independent rect. 13 23
835 355.50 temperature 20 30 < th dose dependent rect. 1 23
845 355.54 humidity 50 720 > th dose dependent rect. 14 18
856 355.57 temperature 20 10 < th dose independent rect. 21 23
863 355.58 temperature 20 1440 > th dose independent rect. 1 1
889 355.64 humidity 70 1440 > th dose dependent rect. 11 3
900 355.68 wind 3 14400 < th dose independent rect. 22 6
905 355.70 temperature 20 10 < th dose independent rect. 11 23
936 355.78 temperature 20 10 < th dose independent no NA NA
1000 355.95 temperature 20 10 < th dose independent rect. 5 23