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Os06g0600800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0184) R2 : 0.487
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.979 (0.0471) R2dC : 0.487 R2C : 0.484
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0489 (0.0387) R2dN8 : 0.00233 R2N8 : -0.000274
σ : 0.347
deviance : 54.97
__
_____
C
peak time of C : 4.12
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.84 0.308 11.2 -0.336 1.04 0.477 0.141 0.0328 -0.208 3.9 61 1221 -- --
42.84 0.305 11.2 -0.335 1.04 0.48 0.14 -- -0.208 3.9 61 1216 -- --
42.89 0.305 11.2 -0.335 1.04 0.48 -- -0.0178 -0.207 3.9 61.15 1199 -- --
42.89 0.305 11.2 -0.336 1.04 0.479 -- -- -0.207 3.9 61.18 1199 -- --
60.49 0.362 11.1 -0.378 -- 0.818 -- 0.0811 0.0311 -- 72.52 346 -- --
50.23 0.332 11.1 -0.423 0.987 -- 0.0362 -- -0.0959 4.11 -- -- -- --
50.24 0.332 11.1 -0.424 0.987 -- -- -- -0.0961 4.11 -- -- -- --
59.57 0.359 11.1 -0.32 -- 0.893 -- -- -0.0326 -- 72.99 366 -- --
45.78 0.315 11.2 -- 1.04 0.526 -- -- -0.181 3.89 61.85 1187 -- --
103.14 0.475 11.2 -0.384 -- -- -- -- -0.0699 -- -- -- -- --
54.97 0.347 11.1 -- 0.979 -- -- -- -0.0489 4.12 -- -- -- --
62.22 0.367 11.1 -- -- 0.926 -- -- 0.00854 -- 71.46 371 -- --
107.03 0.483 11.1 -- -- -- -- -- -0.0273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.97 humidity 70.0 720 > th dose independent rect. 17 12
3 42.46 humidity 70.0 720 > th dose independent rect. 17 3
6 42.53 radiation 30.0 270 < th dose dependent sin 13 NA
12 42.71 humidity 60.0 720 > th dose independent rect. 17 20
13 42.72 temperature 25.0 14400 < th dose dependent rect. 12 1
15 42.74 radiation 20.0 720 < th dose dependent rect. 16 15
21 42.81 radiation 1.0 90 < th dose dependent rect. 19 23
22 42.83 temperature 30.0 720 < th dose independent rect. 17 12
39 43.00 radiation 1.0 90 < th dose independent rect. 19 23
54 43.09 radiation 20.0 4320 > th dose dependent rect. 7 1
58 43.10 radiation 20.0 270 < th dose independent sin 13 NA
60 43.11 radiation 30.0 4320 < th dose independent rect. 7 1
64 43.13 radiation 1.0 720 > th dose dependent sin 13 NA
68 43.15 radiation 30.0 4320 < th dose independent rect. 20 12
85 43.15 radiation 1.0 720 > th dose dependent rect. 13 20
88 43.18 radiation 20.0 4320 > th dose independent rect. 7 1
112 43.20 radiation 20.0 270 > th dose independent rect. 15 17
122 43.21 radiation 10.0 270 > th dose dependent rect. 15 17
140 43.29 radiation 30.0 4320 < th dose independent rect. 2 6
147 43.31 radiation 30.0 4320 < th dose independent rect. 4 4
160 43.33 temperature 20.0 14400 > th dose independent rect. 9 18
176 43.35 humidity 70.0 1440 < th dose dependent rect. 17 19
198 43.39 wind 5.0 14400 > th dose independent rect. 1 10
206 43.40 wind 5.0 14400 > th dose dependent rect. 4 6
210 43.41 temperature 30.0 720 < th dose independent rect. 17 3
215 43.42 temperature 20.0 14400 > th dose independent sin 18 NA
219 43.42 temperature 25.0 14400 < th dose dependent sin 21 NA
248 43.44 humidity 70.0 720 > th dose independent rect. 9 12
255 43.45 wind 5.0 14400 < th dose independent rect. 1 10
257 43.45 temperature 20.0 14400 > th dose independent rect. 14 13
260 43.45 humidity 60.0 1440 < th dose independent rect. 17 21
261 43.45 wind 5.0 14400 > th dose dependent rect. 5 4
286 43.48 radiation 10.0 720 < th dose independent rect. 16 15
295 43.49 radiation 20.0 720 > th dose independent sin 13 NA
297 43.49 humidity 70.0 720 < th dose independent rect. 15 19
298 43.49 humidity 70.0 720 < th dose independent rect. 13 21
306 43.50 temperature 20.0 14400 < th dose independent rect. 8 19
334 43.52 wind 5.0 14400 > th dose dependent rect. 3 8
345 43.54 humidity 60.0 1440 > th dose independent rect. 9 5
359 43.55 temperature 20.0 14400 > th dose independent rect. 19 8
363 43.55 humidity 60.0 1440 > th dose independent rect. 22 16
376 43.56 humidity 60.0 1440 > th dose independent rect. 4 10
378 43.56 humidity 60.0 1440 > th dose independent rect. 2 12
387 43.56 radiation 20.0 720 > th dose independent rect. 13 20
394 43.57 precipitation 0.1 14400 < th dose independent rect. 8 1
406 43.57 precipitation 0.1 14400 < th dose dependent rect. 8 1
422 43.59 temperature 20.0 14400 < th dose independent sin 17 NA
430 43.59 humidity 70.0 1440 < th dose dependent sin 9 NA
447 43.60 wind 5.0 14400 > th dose dependent sin 7 NA
478 43.62 humidity 80.0 1440 < th dose dependent rect. 9 1
480 43.63 humidity 60.0 1440 > th dose independent sin 4 NA
492 43.63 temperature 20.0 14400 < th dose dependent rect. 21 1
499 43.64 temperature 20.0 14400 < th dose independent rect. 22 1
503 43.64 temperature 20.0 14400 < th dose independent rect. 15 12
518 43.65 temperature 20.0 14400 < th dose independent rect. 21 3
525 43.65 wind 9.0 43200 > th dose dependent rect. 14 2
543 43.67 humidity 70.0 720 > th dose independent sin 12 NA
581 43.69 temperature 20.0 14400 > th dose independent no NA NA
589 43.69 temperature 20.0 14400 > th dose independent rect. 17 23
604 43.70 temperature 20.0 14400 > th dose independent rect. 15 22
610 43.70 temperature 20.0 14400 > th dose independent rect. 13 23
619 43.70 wind 9.0 43200 > th dose dependent rect. 11 6
633 43.71 temperature 20.0 14400 > th dose independent rect. 17 20
642 43.71 temperature 20.0 14400 > th dose independent rect. 10 23
649 43.72 humidity 60.0 1440 < th dose independent rect. 11 2
669 43.72 wind 7.0 43200 > th dose dependent rect. 3 11
699 43.74 humidity 60.0 1440 < th dose independent rect. 9 5
725 43.75 temperature 20.0 14400 > th dose independent rect. 21 2
749 43.76 temperature 25.0 14400 > th dose independent rect. 11 1
750 43.76 humidity 70.0 1440 > th dose independent rect. 9 1
780 43.76 humidity 70.0 1440 < th dose dependent rect. 9 5
794 43.77 wind 9.0 43200 > th dose independent rect. 20 19
802 43.77 humidity 70.0 1440 < th dose dependent rect. 7 7
818 43.78 humidity 70.0 720 > th dose independent sin 16 NA
822 43.78 radiation 1.0 270 < th dose independent rect. 11 17
824 43.78 humidity 70.0 720 > th dose independent rect. 9 19
827 43.78 wind 9.0 43200 > th dose dependent rect. 11 3
846 43.79 wind 7.0 43200 > th dose dependent rect. 24 15
850 43.80 radiation 20.0 270 > th dose independent rect. 15 2
852 43.80 radiation 30.0 43200 < th dose independent rect. 17 3
869 43.80 wind 9.0 43200 < th dose independent rect. 3 12
898 43.81 humidity 60.0 1440 < th dose independent sin 3 NA
918 43.81 humidity 60.0 1440 > th dose independent rect. 2 22
923 43.81 temperature 20.0 14400 < th dose independent rect. 24 23
934 43.82 wind 5.0 14400 > th dose independent sin 7 NA
939 43.82 humidity 60.0 1440 > th dose independent no NA NA
943 43.82 wind 9.0 43200 > th dose independent rect. 11 6
956 43.82 humidity 60.0 1440 > th dose independent rect. 4 15