Os06g0600100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TAT-binding protein homolog (Fragment).
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Os06g0600100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TAT-binding protein homolog (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.49 | 0.259 | 9.21 | -0.562 | 0.436 | 0.345 | 0.368 | 0.131 | -0.245 | 11 | 21.3 | 989 | -- | -- |
| 30.47 | 0.257 | 9.21 | -0.56 | 0.442 | 0.306 | 0.399 | -- | -0.253 | 10.9 | 22 | 1038 | -- | -- |
| 30.99 | 0.259 | 9.22 | -0.589 | 0.437 | 0.34 | -- | -0.0162 | -0.255 | 10.9 | 21.4 | 991 | -- | -- |
| 30.95 | 0.259 | 9.22 | -0.561 | 0.432 | 0.311 | -- | -- | -0.259 | 10.9 | 22 | 1033 | -- | -- |
| 38.41 | 0.29 | 9.21 | -0.46 | -- | 0.294 | -- | 0.341 | -0.212 | -- | 21.59 | 1563 | -- | -- |
| 34.15 | 0.274 | 9.19 | -0.465 | 0.384 | -- | 0.361 | -- | -0.159 | 11 | -- | -- | -- | -- |
| 34.68 | 0.276 | 9.19 | -0.451 | 0.384 | -- | -- | -- | -0.158 | 10.8 | -- | -- | -- | -- |
| 38.56 | 0.29 | 9.22 | -0.531 | -- | 0.283 | -- | -- | -0.24 | -- | 22 | 1033 | -- | -- |
| 38.57 | 0.289 | 9.2 | -- | 0.418 | 0.185 | -- | -- | -0.192 | 10.7 | 22.3 | 1018 | -- | -- |
| 43.8 | 0.309 | 9.2 | -0.459 | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
| 40.04 | 0.296 | 9.18 | -- | 0.387 | -- | -- | -- | -0.108 | 10.9 | -- | -- | -- | -- |
| 45.8 | 0.316 | 9.21 | -- | -- | 0.23 | -- | -- | -0.168 | -- | 22 | 1033 | -- | -- |
| 49.35 | 0.328 | 9.19 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.38 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 2 | 28.83 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 3 | 28.85 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 10 | 28.94 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 11 | 28.94 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 17 | 28.98 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 34 | 29.09 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 50 | 29.23 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 59 | 29.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 81 | 29.43 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 83 | 29.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 84 | 29.44 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 107 | 29.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 130 | 29.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 135 | 29.53 | wind | 9.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 184 | 29.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 186 | 29.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 211 | 29.62 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 233 | 29.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 345 | 29.78 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 352 | 29.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 356 | 29.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 364 | 29.81 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 367 | 29.81 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 377 | 29.83 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 386 | 29.85 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 390 | 29.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 394 | 29.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 395 | 29.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 408 | 29.88 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 425 | 29.90 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 429 | 29.91 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 430 | 29.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 432 | 29.92 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 433 | 29.92 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 449 | 29.93 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 457 | 29.94 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 468 | 29.96 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 486 | 29.98 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 502 | 29.99 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 540 | 30.02 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 553 | 30.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 621 | 30.08 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 625 | 30.08 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 653 | 30.10 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 17 |
| 656 | 30.11 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 662 | 30.11 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 685 | 30.12 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 699 | 30.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 703 | 30.14 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 720 | 30.15 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 731 | 30.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 737 | 30.16 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 753 | 30.17 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 757 | 30.18 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 902 | 30.29 | wind | 9.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 941 | 30.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 946 | 30.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 11 |
| 957 | 30.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 958 | 30.33 | wind | 9.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 1000 | 30.35 | wind | 7.0 | 1440 | < th | dose independent | rect. | 20 | 13 |