Os06g0597800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os06g0597800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.86 | 0.209 | 10.4 | 0.509 | 0.655 | -0.319 | 0.338 | 1.1 | -0.217 | 7.38 | 20.6 | 2711 | -- | -- |
| 22.09 | 0.219 | 10.5 | 0.346 | 0.65 | -0.483 | 0.42 | -- | -0.239 | 7.37 | 21.2 | 3975 | -- | -- |
| 20.16 | 0.209 | 10.4 | 0.522 | 0.656 | -0.321 | -- | 1.12 | -0.216 | 7.34 | 20.54 | 2716 | -- | -- |
| 20.67 | 0.212 | 10.5 | 0.343 | 0.641 | -0.657 | -- | -- | -0.289 | 7.31 | 18.67 | 2770 | -- | -- |
| 42.63 | 0.304 | 10.4 | 0.587 | -- | -0.361 | -- | 1.1 | -0.185 | -- | 20.61 | 3463 | -- | -- |
| 27.04 | 0.244 | 10.5 | 0.0344 | 0.647 | -- | 0.41 | -- | -0.396 | 7.5 | -- | -- | -- | -- |
| 27.51 | 0.246 | 10.5 | 0.0439 | 0.648 | -- | -- | -- | -0.396 | 7.48 | -- | -- | -- | -- |
| 42.63 | 0.304 | 10.5 | 0.699 | -- | -0.738 | -- | -- | -0.203 | -- | 14.6 | 47520 | -- | -- |
| 23.34 | 0.225 | 10.5 | -- | 0.658 | -0.439 | -- | -- | -0.337 | 7.35 | 19 | 2730 | -- | -- |
| 49.92 | 0.33 | 10.5 | 0.0538 | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
| 27.56 | 0.246 | 10.5 | -- | 0.648 | -- | -- | -- | -0.401 | 7.48 | -- | -- | -- | -- |
| 45.06 | 0.313 | 10.5 | -- | -- | -0.455 | -- | -- | -0.323 | -- | 19.4 | 2060 | -- | -- |
| 50 | 0.33 | 10.5 | -- | -- | -- | -- | -- | -0.392 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 18.35 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 18.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 6 | 18.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 8 | 18.77 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 9 | 18.77 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 11 | 18.82 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 12 | 18.90 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 14 | 18.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 17 | 18.99 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 18 | 18.99 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 22 | 19.02 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 40 | 19.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 48 | 19.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 58 | 19.10 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 62 | 19.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 82 | 19.14 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 107 | 19.18 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 129 | 19.22 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 151 | 19.26 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 156 | 19.26 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 181 | 19.29 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 186 | 19.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 213 | 19.34 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 233 | 19.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 238 | 19.38 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 252 | 19.40 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 271 | 19.43 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 287 | 19.45 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 298 | 19.46 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 300 | 19.46 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 304 | 19.47 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 306 | 19.47 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 333 | 19.48 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 340 | 19.49 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 348 | 19.50 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 350 | 19.50 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 355 | 19.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 383 | 19.51 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 411 | 19.53 | wind | 9.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 423 | 19.53 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 441 | 19.54 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 469 | 19.56 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 509 | 19.58 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 534 | 19.60 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 579 | 19.62 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 596 | 19.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 613 | 19.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 623 | 19.64 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 624 | 19.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 626 | 19.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 641 | 19.65 | wind | 7.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 642 | 19.65 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 656 | 19.65 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 675 | 19.66 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 729 | 19.68 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 730 | 19.68 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 752 | 19.68 | wind | 7.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 765 | 19.68 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 22 | 19 |
| 771 | 19.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 795 | 19.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 806 | 19.70 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 819 | 19.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 833 | 19.70 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 834 | 19.71 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 848 | 19.71 | wind | 9.0 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 867 | 19.72 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 868 | 19.72 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 879 | 19.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 893 | 19.72 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 902 | 19.72 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 908 | 19.73 | wind | 9.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 910 | 19.73 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 914 | 19.73 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 963 | 19.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 967 | 19.74 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 973 | 19.74 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 6 |