Os06g0597500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0597500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 529 | 1.08 | 4.15 | 1.31 | 0.925 | 2.11 | 0.479 | 2.46 | -0.134 | 12.8 | 23.7 | 157 | -- | -- |
| 535.78 | 1.08 | 4.11 | 1.62 | 0.899 | 1.76 | -0.0475 | -- | -0.0628 | 12.8 | 24.2 | 157 | -- | -- |
| 529.85 | 1.07 | 4.14 | 1.35 | 0.911 | 2.13 | -- | 2.28 | -0.133 | 12.8 | 23.55 | 164 | -- | -- |
| 535.71 | 1.08 | 4.1 | 1.63 | 0.891 | 1.73 | -- | -- | -0.055 | 12.8 | 24.3 | 169 | -- | -- |
| 554.43 | 1.1 | 4.15 | 1.36 | -- | 1.77 | -- | 1.47 | -0.0673 | -- | 27.06 | 896 | -- | -- |
| 577.44 | 1.13 | 4.17 | 1.21 | 0.678 | -- | -0.0661 | -- | -0.355 | 12.3 | -- | -- | -- | -- |
| 577.45 | 1.13 | 4.17 | 1.21 | 0.679 | -- | -- | -- | -0.355 | 12.3 | -- | -- | -- | -- |
| 553.88 | 1.1 | 4.1 | 1.7 | -- | 1.81 | -- | -- | 0.00761 | -- | 29.67 | 932 | -- | -- |
| 598.04 | 1.15 | 4.17 | -- | 0.839 | 1.06 | -- | -- | -0.339 | 12.4 | 24.2 | 130 | -- | -- |
| 606.41 | 1.15 | 4.18 | 1.18 | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
| 615.75 | 1.16 | 4.2 | -- | 0.662 | -- | -- | -- | -0.489 | 12.2 | -- | -- | -- | -- |
| 620.89 | 1.16 | 4.18 | -- | -- | 1.11 | -- | -- | -0.337 | -- | 32.2 | 908 | -- | -- |
| 643.3 | 1.18 | 4.21 | -- | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 522.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 3 | 523.57 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 4 | 524.17 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 40 | 527.03 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 84 | 528.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 89 | 528.95 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 14 |
| 95 | 529.04 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 14 |
| 105 | 529.22 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 110 | 529.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 121 | 529.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 136 | 529.92 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 150 | 530.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 163 | 530.27 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 188 | 530.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 194 | 530.72 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 207 | 530.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 220 | 530.91 | temperature | 20.0 | 10 | < th | dose independent | rect. | 2 | 22 |
| 236 | 531.19 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 251 | 531.31 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 272 | 531.49 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 279 | 531.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 304 | 531.74 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 20 |
| 315 | 531.80 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 330 | 531.94 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 376 | 532.15 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 400 | 532.28 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 410 | 532.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 8 |
| 426 | 532.47 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 427 | 532.48 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 441 | 532.55 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 11 |
| 462 | 532.63 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 464 | 532.64 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 465 | 532.64 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 485 | 532.71 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 493 | 532.74 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 517 | 532.84 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 523 | 532.88 | temperature | 20.0 | 10 | < th | dose independent | sin | 8 | NA |
| 542 | 532.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 553 | 533.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 563 | 533.05 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 568 | 533.06 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 569 | 533.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 628 | 533.26 | temperature | 20.0 | 270 | < th | dose independent | sin | 11 | NA |
| 642 | 533.33 | temperature | 20.0 | 10 | > th | dose independent | sin | 7 | NA |
| 664 | 533.38 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 671 | 533.41 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 673 | 533.41 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 719 | 533.60 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 723 | 533.62 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 816 | 533.93 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 817 | 533.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 835 | 533.99 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 838 | 533.99 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 23 |
| 869 | 534.08 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 893 | 534.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 918 | 534.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 926 | 534.29 | temperature | 20.0 | 270 | > th | dose independent | sin | 10 | NA |
| 937 | 534.33 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 940 | 534.35 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 942 | 534.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 960 | 534.42 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 971 | 534.46 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 989 | 534.54 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 992 | 534.57 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 994 | 534.57 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 6 |