Os06g0597200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein phosphatase 2C.
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Os06g0597200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-binding protein phosphatase 2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.79 | 0.209 | 11.3 | -0.0654 | 0.328 | 0.388 | 0.179 | 0.355 | -0.162 | 3.32 | 8.522 | 8 | -- | -- |
| 20.01 | 0.208 | 11.3 | -0.0493 | 0.329 | 0.39 | 0.0559 | -- | -0.16 | 3.22 | 8.356 | 7 | -- | -- |
| 19.87 | 0.208 | 11.3 | -0.0683 | 0.328 | 0.394 | -- | 0.265 | -0.159 | 3.2 | 8.565 | 7 | -- | -- |
| 20.01 | 0.208 | 11.3 | -0.0557 | 0.326 | 0.385 | -- | -- | -0.161 | 3.25 | 8.532 | 7 | -- | -- |
| 24.25 | 0.229 | 11.3 | -0.0459 | -- | 0.213 | -- | 0.207 | -0.156 | -- | 23.25 | 6 | -- | -- |
| 22.13 | 0.221 | 11.3 | -0.0539 | 0.23 | -- | 0.373 | -- | -0.162 | 5.81 | -- | -- | -- | -- |
| 22.43 | 0.222 | 11.3 | -0.0522 | 0.234 | -- | -- | -- | -0.164 | 5.36 | -- | -- | -- | -- |
| 24.31 | 0.231 | 11.3 | -0.0379 | -- | 0.245 | -- | -- | -0.153 | -- | 34.09 | 6 | -- | -- |
| 20.09 | 0.209 | 11.3 | -- | 0.328 | 0.385 | -- | -- | -0.156 | 3.25 | 8.43 | 7 | -- | -- |
| 25.27 | 0.235 | 11.3 | -0.0442 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 22.5 | 0.222 | 11.3 | -- | 0.233 | -- | -- | -- | -0.158 | 5.36 | -- | -- | -- | -- |
| 24.34 | 0.231 | 11.3 | -- | -- | 0.247 | -- | -- | -0.149 | -- | 34.09 | 5 | -- | -- |
| 25.32 | 0.235 | 11.3 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.70 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 5 | 18.85 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 6 | 18.87 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 8 | 18.89 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 12 | 18.93 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 14 | 18.97 | radiation | 10.0 | 270 | > th | dose independent | sin | 8 | NA |
| 15 | 18.98 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 30 | 19.01 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 43 | 19.01 | radiation | 1.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 58 | 19.03 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 60 | 19.03 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 63 | 19.04 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 64 | 19.05 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 67 | 19.05 | radiation | 1.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 75 | 19.09 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 76 | 19.09 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 15 |
| 77 | 19.09 | radiation | 20.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 78 | 19.09 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 87 | 19.12 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 96 | 19.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 98 | 19.15 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 99 | 19.16 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 106 | 19.18 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 114 | 19.19 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 115 | 19.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 121 | 19.20 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 132 | 19.22 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 134 | 19.23 | radiation | 40.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 137 | 19.23 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 153 | 19.24 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 160 | 19.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 162 | 19.25 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 173 | 19.27 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 174 | 19.27 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 7 |
| 224 | 19.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 228 | 19.31 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 253 | 19.34 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 260 | 19.34 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 263 | 19.35 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 299 | 19.39 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 330 | 19.39 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 343 | 19.41 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 345 | 19.41 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 352 | 19.42 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 400 | 19.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 407 | 19.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 413 | 19.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 415 | 19.45 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 418 | 19.45 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 420 | 19.45 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 421 | 19.45 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 424 | 19.45 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 429 | 19.45 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 455 | 19.47 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 456 | 19.47 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 458 | 19.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 459 | 19.47 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 461 | 19.47 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 466 | 19.47 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 475 | 19.47 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 477 | 19.47 | radiation | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 483 | 19.47 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 495 | 19.48 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 498 | 19.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 500 | 19.48 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 506 | 19.48 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 508 | 19.48 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 515 | 19.48 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 517 | 19.49 | radiation | 20.0 | 30 | > th | dose independent | sin | 4 | NA |
| 524 | 19.49 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 573 | 19.50 | radiation | 10.0 | 270 | < th | dose independent | sin | 8 | NA |
| 578 | 19.50 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 582 | 19.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 590 | 19.50 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 599 | 19.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 11 |
| 616 | 19.52 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 635 | 19.52 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 645 | 19.52 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 670 | 19.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 674 | 19.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 677 | 19.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 678 | 19.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 684 | 19.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 695 | 19.54 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 702 | 19.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 715 | 19.55 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 719 | 19.55 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 727 | 19.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 12 |
| 730 | 19.55 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 731 | 19.55 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 758 | 19.55 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 19 |
| 761 | 19.56 | radiation | 20.0 | 30 | < th | dose independent | sin | 3 | NA |
| 762 | 19.56 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 764 | 19.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 775 | 19.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 805 | 19.58 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 821 | 19.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 824 | 19.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 826 | 19.58 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 834 | 19.58 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 864 | 19.59 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 897 | 19.60 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 925 | 19.61 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 6 |