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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0594600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.117) R2 : 0.458
β1 : -3.99 (0.848) R2dD : 0.315 R2D : -0.277
β2 : 1.61 (0.164) R2dC : 0.118 R2C : 0.166
β3 : 4.72 (0.548) R2dE : 0.772 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.4 (4.68) R2dD*E : 0.285 R2D*E : -0.614
γ1 : 0.549 (0.156) R2dN8 : 0.0226 R2N8 : -0.031
σ : 1.28
deviance : 750.55
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_____
C
peak time of C : 23.5
E
wheather : temperature
threshold : 28.48
memory length : 1191
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.95
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
750.61 1.29 5.08 -3.98 1.62 4.76 -0.172 -17.6 0.595 23.5 28.57 1194 7.52 --
770.67 1.29 4.74 -0.922 1.61 2.96 -0.387 -- 0.738 23.5 28.3 1140 7.28 --
750.55 1.28 5.08 -3.99 1.61 4.72 -- -17.4 0.549 23.5 28.48 1191 7.95 --
769.72 1.29 4.76 -0.994 1.51 3.04 -- -- 0.61 23.2 27.35 1086 7.86 --
834.35 1.35 5.2 -4.09 -- 5.07 -- -14.7 -0.722 -- 23.95 916 10 --
1109.01 1.56 4.82 -0.272 2.04 -- 0.339 -- 0.349 0.144 -- -- -- --
1109.51 1.56 4.82 -0.285 2.04 -- -- -- 0.348 0.127 -- -- -- --
797.72 1.32 4.91 -1.32 -- 4.58 -- -- -0.208 -- 18.63 967 12.8 --
795.27 1.31 4.72 -- 1.49 2.93 -- -- 0.757 23.2 27.4 1057 7.47 --
1370.36 1.73 4.78 -0.22 -- -- -- -- 0.378 -- -- -- -- --
1111.65 1.56 4.81 -- 2.03 -- -- -- 0.38 0.119 -- -- -- --
842.42 1.35 4.87 -- -- 4.13 -- -- -0.0404 -- 20.8 893 11.7 --
1371.64 1.73 4.77 -- -- -- -- -- 0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 746.25 radiation 30 14400 < th dose independent rect. 16 11
4 748.92 radiation 30 14400 < th dose independent rect. 16 9
6 750.01 radiation 30 14400 < th dose independent rect. 16 2
8 751.82 radiation 30 14400 < th dose independent rect. 16 4
10 753.79 radiation 30 14400 < th dose independent rect. 16 6
15 755.54 radiation 10 1440 < th dose dependent rect. 18 9
16 756.18 radiation 10 1440 < th dose dependent rect. 18 11
20 762.03 radiation 10 14400 > th dose independent rect. 5 1
33 762.64 humidity 50 1440 < th dose independent rect. 16 1
34 763.26 humidity 50 1440 < th dose dependent rect. 16 1
35 765.34 radiation 10 1440 < th dose dependent rect. 18 7
37 768.40 radiation 40 14400 > th dose dependent rect. 15 17
38 769.60 radiation 10 1440 < th dose dependent rect. 18 2
39 769.71 humidity 50 1440 > th dose independent rect. 16 1
42 773.23 radiation 30 4320 > th dose independent rect. 16 16
43 774.83 temperature 30 1440 > th dose dependent sin 12 NA
44 775.01 temperature 30 1440 > th dose dependent rect. 16 3
73 775.53 radiation 30 4320 < th dose independent rect. 7 1
79 776.49 humidity 60 1440 < th dose dependent rect. 16 3
94 777.03 radiation 10 1440 < th dose dependent rect. 18 4
101 778.75 radiation 30 4320 > th dose independent rect. 7 1
133 780.00 radiation 30 4320 < th dose independent rect. 21 11
135 780.18 radiation 30 4320 < th dose independent rect. 23 9
153 780.49 humidity 50 1440 > th dose independent rect. 16 13
157 780.71 humidity 50 1440 > th dose independent rect. 16 4
194 780.98 humidity 50 1440 > th dose independent rect. 16 9
199 781.27 humidity 50 1440 > th dose independent rect. 16 6
204 781.55 humidity 50 1440 > th dose independent rect. 16 17
209 781.71 radiation 30 4320 < th dose independent rect. 19 13
220 783.19 radiation 30 14400 > th dose dependent rect. 16 1
236 783.57 radiation 30 4320 < th dose independent rect. 2 6
237 783.82 radiation 1 1440 > th dose dependent rect. 18 11
277 785.39 radiation 1 1440 > th dose dependent rect. 18 1
310 787.07 radiation 30 14400 > th dose independent rect. 16 1
340 787.68 wind 5 43200 > th dose dependent rect. 24 17
391 790.06 wind 5 43200 > th dose independent rect. 24 17
451 791.65 wind 5 43200 < th dose independent rect. 24 17
480 792.51 temperature 30 1440 > th dose dependent no NA NA
631 793.44 wind 5 43200 > th dose dependent rect. 7 9
638 793.62 radiation 1 1440 < th dose independent rect. 18 11
681 794.29 wind 5 43200 > th dose dependent sin 2 NA
708 795.07 radiation 1 1440 < th dose independent rect. 18 9
763 796.15 wind 7 43200 < th dose independent sin 4 NA
808 796.82 radiation 1 1440 > th dose independent rect. 18 11
817 796.99 radiation 1 1440 < th dose independent rect. 18 7
850 797.44 wind 7 43200 > th dose independent sin 4 NA
930 798.23 radiation 1 1440 < th dose independent rect. 18 2
960 798.56 radiation 1 1440 > th dose independent rect. 18 1
997 799.00 wind 5 43200 > th dose independent rect. 7 9