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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0590700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0369) R2 : 0.521
β1 : 2.19 (0.132) R2dD : 0.301 R2D : 0.24
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.42 (0.159) R2dE : 0.301 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.716 (0.0851) R2dN8 : 0.123 R2N8 : -0.0914
σ : 0.673
deviance : 208.62
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.149
memory length : 7676
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.92 0.641 3.35 1.43 0.783 -2.14 1.7 -4.68 0.489 3.39 1.3 4307 -- --
204.84 0.667 3.29 2.08 0.677 -2.31 1.41 -- 0.556 3.02 1.81 2831 -- --
194 0.649 3.35 1.34 0.764 -2.07 -- -4.8 0.459 3.88 1.3 4326 -- --
207.3 0.671 3.27 2.32 0.974 -2.33 -- -- 0.724 1.81 1.774 2766 -- --
180.45 0.626 3.35 1.32 -- -2.18 -- -4.69 0.457 -- 2.143 7663 -- --
288.61 0.796 3.36 2.07 0.677 -- 1.47 -- 0.264 3.7 -- -- -- --
294.9 0.804 3.36 2.05 0.693 -- -- -- 0.256 4.05 -- -- -- --
208.62 0.673 3.35 2.19 -- -2.42 -- -- 0.716 -- 2.149 7676 -- --
344.18 0.864 3.28 -- 0.915 -2.09 -- -- 0.536 1.64 2.15 2751 -- --
321.09 0.837 3.36 2.08 -- -- -- -- 0.274 -- -- -- -- --
405.7 0.942 3.41 -- 0.733 -- -- -- 0.0273 4 -- -- -- --
316.23 0.828 3.27 -- -- -2.37 -- -- 0.645 -- 6.996 9160 -- --
435.05 0.974 3.41 -- -- -- -- -- 0.0436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.76 precipitation 0.1 43200 < th dose independent rect. 15 2
2 163.76 precipitation 0.1 43200 < th dose dependent rect. 15 2
3 163.88 precipitation 0.1 43200 > th dose independent rect. 15 2
4 164.16 precipitation 0.1 43200 < th dose independent rect. 13 4
5 164.16 precipitation 0.1 43200 < th dose dependent rect. 13 4
8 164.25 precipitation 0.1 43200 > th dose dependent rect. 14 3
9 164.33 precipitation 0.1 43200 > th dose independent rect. 13 4
18 166.70 precipitation 0.1 43200 > th dose independent rect. 19 1
19 166.70 precipitation 0.1 43200 < th dose independent rect. 19 1
20 166.70 precipitation 0.1 43200 < th dose dependent rect. 19 1
24 167.10 precipitation 0.1 43200 < th dose independent rect. 13 7
25 167.10 precipitation 0.1 43200 < th dose dependent rect. 13 7
26 167.13 precipitation 0.1 43200 > th dose independent rect. 13 7
40 168.42 radiation 20.0 14400 > th dose dependent rect. 16 16
41 168.48 humidity 80.0 43200 > th dose dependent rect. 15 3
47 168.93 wind 9.0 43200 > th dose dependent rect. 18 1
57 169.43 humidity 80.0 43200 > th dose independent rect. 14 3
59 169.47 humidity 80.0 43200 > th dose independent rect. 14 1
63 169.56 precipitation 0.1 43200 > th dose dependent rect. 19 1
66 169.62 humidity 70.0 14400 > th dose independent rect. 19 1
71 169.68 humidity 90.0 43200 < th dose independent rect. 13 8
78 169.89 radiation 20.0 14400 > th dose dependent rect. 7 1
83 170.06 humidity 90.0 43200 > th dose dependent rect. 16 5
94 170.26 radiation 10.0 43200 > th dose independent rect. 5 1
125 170.35 humidity 80.0 43200 < th dose independent rect. 14 1
126 170.37 wind 3.0 43200 < th dose dependent rect. 3 2
130 170.43 radiation 20.0 14400 < th dose independent rect. 16 17
131 170.43 humidity 90.0 43200 > th dose dependent rect. 20 1
140 170.72 humidity 70.0 14400 > th dose independent rect. 19 5
142 170.73 humidity 70.0 14400 > th dose independent rect. 19 12
144 170.76 humidity 70.0 14400 > th dose independent rect. 19 7
147 170.78 radiation 20.0 14400 > th dose dependent rect. 15 18
149 170.79 humidity 90.0 43200 > th dose independent rect. 12 10
157 170.90 humidity 80.0 43200 > th dose dependent rect. 8 11
169 171.10 humidity 90.0 43200 > th dose independent rect. 15 6
213 171.69 humidity 80.0 43200 > th dose independent rect. 9 8
217 171.71 radiation 40.0 4320 > th dose dependent rect. 14 20
220 171.72 humidity 80.0 43200 > th dose dependent rect. 9 1
224 171.74 humidity 90.0 43200 > th dose independent rect. 9 13
239 171.84 radiation 10.0 14400 < th dose independent rect. 13 20
240 171.84 radiation 10.0 14400 < th dose independent rect. 11 22
244 171.95 precipitation 0.1 43200 > th dose independent sin 20 NA
245 171.95 precipitation 0.1 43200 < th dose independent sin 20 NA
246 171.95 precipitation 0.1 43200 < th dose dependent sin 20 NA
268 172.10 radiation 20.0 14400 > th dose independent rect. 16 16
329 172.52 temperature 25.0 14400 > th dose dependent rect. 22 3
357 172.71 precipitation 0.1 43200 > th dose dependent rect. 13 1
372 172.78 radiation 10.0 14400 < th dose independent rect. 13 23
378 172.83 radiation 20.0 14400 < th dose independent sin 12 NA
395 172.88 radiation 30.0 14400 < th dose independent rect. 6 3
415 172.95 radiation 30.0 14400 < th dose independent rect. 20 13
418 172.96 radiation 30.0 14400 < th dose independent rect. 22 11
427 172.99 radiation 30.0 14400 < th dose independent rect. 2 7
434 172.99 radiation 10.0 14400 < th dose independent rect. 15 21
486 173.16 humidity 90.0 43200 < th dose independent rect. 19 2
493 173.19 radiation 10.0 14400 < th dose independent rect. 8 23
540 173.35 radiation 10.0 14400 < th dose independent no NA NA
541 173.35 radiation 10.0 14400 < th dose independent rect. 4 15
545 173.35 radiation 10.0 14400 < th dose independent rect. 1 19
578 173.36 humidity 80.0 43200 < th dose independent rect. 9 8
616 173.41 humidity 80.0 43200 > th dose dependent rect. 8 3
645 173.49 wind 9.0 43200 < th dose dependent rect. 3 1
703 173.63 radiation 30.0 14400 > th dose dependent rect. 14 2
704 173.64 humidity 60.0 43200 > th dose independent rect. 14 1
747 173.77 wind 9.0 43200 > th dose independent rect. 18 1
778 173.82 precipitation 0.1 43200 > th dose dependent rect. 3 17
816 173.96 humidity 90.0 43200 < th dose independent sin 21 NA
925 174.39 radiation 10.0 14400 < th dose independent sin 0 NA
977 174.50 precipitation 0.1 43200 > th dose dependent rect. 9 11
979 174.51 precipitation 0.1 43200 < th dose independent rect. 13 1
980 174.51 precipitation 0.1 43200 < th dose dependent rect. 13 1