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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0590600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0476) R2 : 0.355
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.06 (0.261) R2dE : 0.348 R2E : 0.353
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0843 (0.101) R2dN8 : 0.0013 R2N8 : 0.00606
σ : 0.892
deviance : 367.14
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_____
C
peak time of C : --
E
wheather : wind
threshold : 9.674
memory length : 4486
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 2.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
362.51 0.895 3.03 0.443 0.00734 0.802 -0.7 14.1 -0.124 3.59 9.591 4204 18.8 2.17
368.15 0.894 3.15 0.0103 0.102 2.99 0.79 -- -0.105 16 8.122 4075 18.6 2.03
362.54 0.887 3.03 0.437 0.105 1.02 -- 15.4 -0.112 21.5 9.749 4014 18.8 2.26
365.73 0.891 3.14 -0.175 0.105 4.13 -- -- -0.1 21.4 9.677 4527 18.6 2.01
363.21 0.888 3.03 0.455 -- 0.89 -- 16.1 -0.127 -- 9.753 4009 18.8 2.27
555.26 1.1 3.18 0.381 0.0681 -- 0.805 -- -0.255 15.2 -- -- -- --
557.23 1.11 3.17 0.397 0.0894 -- -- -- -0.25 17.3 -- -- -- --
366.38 0.891 3.14 -0.174 -- 4.09 -- -- -0.1 -- 9.667 4530 18.6 1.96
366.5 0.892 3.14 -- 0.105 4.1 -- -- -0.0836 21.3 9.683 4485 18.7 2.02
557.64 1.1 3.17 0.394 -- -- -- -- -0.252 -- -- -- -- --
561.39 1.11 3.18 -- 0.0828 -- -- -- -0.294 17.5 -- -- -- --
367.14 0.892 3.13 -- -- 4.06 -- -- -0.0843 -- 9.674 4486 18.7 2.05
561.74 1.11 3.18 -- -- -- -- -- -0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 366.23 wind 9 4320 > th dose dependent rect. 19 2
7 367.69 wind 9 4320 > th dose independent rect. 19 2
9 368.56 wind 9 4320 > th dose dependent rect. 19 7
18 368.75 wind 7 4320 < th dose independent rect. 20 1
41 372.42 wind 9 4320 < th dose independent rect. 20 7
106 382.44 atmosphere 995 14400 < th dose independent rect. 17 1
107 382.44 atmosphere 995 14400 < th dose dependent rect. 17 1
132 383.64 atmosphere 995 14400 > th dose independent rect. 16 2
201 388.70 atmosphere 995 14400 > th dose independent rect. 13 6
208 389.22 atmosphere 995 14400 > th dose independent rect. 8 11
211 389.35 atmosphere 995 14400 > th dose independent rect. 10 9
333 395.79 humidity 90 1440 < th dose dependent rect. 3 1
397 401.61 humidity 80 1440 > th dose dependent rect. 5 1
441 404.38 atmosphere 995 14400 < th dose dependent sin 23 NA
481 405.02 atmosphere 995 14400 > th dose independent sin 3 NA
491 405.13 humidity 90 1440 < th dose dependent rect. 2 5
501 405.45 atmosphere 995 14400 > th dose independent sin 22 NA
531 405.83 atmosphere 995 14400 < th dose independent sin 22 NA
532 405.87 atmosphere 995 14400 < th dose independent sin 2 NA
587 407.15 radiation 1 14400 < th dose dependent rect. 23 3
698 407.98 radiation 1 14400 < th dose dependent rect. 23 1
756 408.35 atmosphere 995 14400 > th dose independent no NA NA
758 408.35 atmosphere 995 14400 > th dose independent rect. 14 23
763 408.36 atmosphere 995 14400 > th dose independent rect. 12 23
839 408.92 humidity 70 1440 > th dose dependent rect. 2 5
906 409.39 atmosphere 995 14400 < th dose independent no NA NA
953 409.76 radiation 1 14400 < th dose dependent rect. 23 5
958 409.99 humidity 90 1440 < th dose dependent rect. 5 1
987 411.23 atmosphere 1005 14400 < th dose independent rect. 5 7
989 411.30 humidity 90 1440 < th dose dependent rect. 23 8