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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0590100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.029) R2 : 0.00587
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.1 (0.0611) R2dN8 : 0.00758 R2N8 : 0.00587
σ : 0.546
deviance : 136.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.14 0.526 3.25 -0.0333 0.049 1.68 -0.463 2.3 0.15 12.9 19.64 821 -- --
127.22 0.525 3.22 0.0311 0.12 0.761 -0.154 -- 0.211 12.1 22.99 583 -- --
125.38 0.522 3.25 -0.0333 0.122 1.6 -- 1.95 0.146 8.91 19.46 831 -- --
127.15 0.525 3.22 0.0319 0.111 0.75 -- -- 0.204 9.61 22.97 720 -- --
126.12 0.523 3.25 -0.0319 -- 1.64 -- 1.98 0.153 -- 19.64 819 -- --
134.05 0.543 3.24 -0.161 0.185 -- -0.136 -- 0.0823 10.3 -- -- -- --
134.12 0.542 3.24 -0.167 0.187 -- -- -- 0.0816 10.1 -- -- -- --
127.82 0.527 3.22 0.0277 -- 0.779 -- -- 0.21 -- 23.05 722 -- --
127.17 0.525 3.22 -- 0.108 0.751 -- -- 0.199 9.96 23 715 -- --
136.24 0.545 3.25 -0.169 -- -- -- -- 0.0814 -- -- -- -- --
134.85 0.543 3.24 -- 0.188 -- -- -- 0.1 10.1 -- -- -- --
127.85 0.527 3.22 -- -- 0.78 -- -- 0.202 -- 23 721 -- --
136.99 0.546 3.24 -- -- -- -- -- 0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.61 temperature 10 720 > th dose dependent rect. 21 12
2 123.80 temperature 30 720 < th dose dependent rect. 24 4
9 123.98 temperature 30 720 < th dose dependent rect. 1 2
17 124.16 wind 1 1440 < th dose dependent rect. 18 5
23 124.27 temperature 10 720 > th dose dependent rect. 2 7
24 124.27 temperature 30 720 < th dose dependent rect. 24 9
28 124.29 temperature 30 720 < th dose dependent rect. 24 11
32 124.32 temperature 20 720 < th dose dependent rect. 24 14
54 124.45 temperature 20 720 < th dose dependent sin 6 NA
75 124.55 temperature 10 720 > th dose dependent rect. 21 17
122 124.74 wind 1 1440 < th dose independent rect. 18 5
142 124.80 temperature 10 720 > th dose dependent sin 8 NA
149 124.82 temperature 20 720 < th dose dependent rect. 3 1
153 124.83 temperature 20 720 < th dose dependent rect. 6 4
172 124.88 temperature 10 90 > th dose dependent rect. 12 23
184 124.91 temperature 20 720 < th dose dependent rect. 6 7
195 124.93 wind 1 720 < th dose dependent rect. 1 1
210 124.97 temperature 20 720 < th dose dependent rect. 6 2
212 124.98 temperature 30 720 < th dose dependent sin 8 NA
263 125.10 wind 1 1440 > th dose independent rect. 18 5
297 125.16 temperature 20 720 < th dose dependent rect. 24 22
316 125.21 wind 5 270 > th dose independent rect. 8 1
430 125.41 temperature 20 720 < th dose dependent rect. 5 23
434 125.43 temperature 20 720 < th dose dependent no NA NA
435 125.43 wind 3 270 > th dose dependent rect. 8 1
447 125.45 wind 1 1440 < th dose dependent rect. 16 7
479 125.50 temperature 20 720 < th dose dependent rect. 9 23
484 125.51 temperature 20 720 < th dose dependent rect. 11 23
527 125.64 temperature 30 270 < th dose dependent rect. 7 22
531 125.65 temperature 30 30 < th dose dependent rect. 11 19
557 125.69 temperature 20 720 < th dose dependent rect. 6 16
561 125.70 wind 1 1440 < th dose dependent rect. 12 14
581 125.74 radiation 1 14400 > th dose independent rect. 6 1
582 125.74 radiation 1 14400 < th dose independent rect. 6 1
594 125.76 wind 7 43200 > th dose independent rect. 4 4
596 125.76 temperature 10 720 > th dose dependent rect. 12 21
599 125.76 temperature 15 10 > th dose dependent rect. 12 23
636 125.83 wind 7 43200 < th dose independent rect. 4 4
640 125.84 wind 3 90 > th dose independent rect. 9 3
644 125.85 wind 1 90 > th dose dependent rect. 10 1
659 125.88 wind 1 1440 < th dose dependent rect. 15 11
676 125.92 wind 1 1440 > th dose independent rect. 16 7
677 125.92 radiation 20 4320 > th dose independent rect. 16 16
689 125.95 wind 7 43200 > th dose independent rect. 3 7
756 126.06 wind 3 90 > th dose independent rect. 10 1
757 126.06 temperature 30 90 < th dose dependent rect. 10 1
758 126.06 wind 1 1440 < th dose dependent rect. 21 2
786 126.11 temperature 30 90 < th dose independent rect. 11 1
804 126.14 wind 5 43200 > th dose dependent rect. 4 4
816 126.16 radiation 40 4320 < th dose independent sin 10 NA
834 126.18 wind 1 1440 < th dose independent rect. 16 7
858 126.22 wind 7 43200 > th dose independent rect. 23 9
865 126.23 wind 7 43200 > th dose independent rect. 23 11
893 126.26 temperature 30 10 < th dose dependent rect. 10 22
903 126.28 radiation 40 4320 < th dose independent rect. 2 8
926 126.30 radiation 40 4320 < th dose independent rect. 20 14
930 126.30 temperature 30 10 < th dose dependent rect. 16 21
939 126.32 temperature 20 720 > th dose independent rect. 4 5
955 126.34 radiation 10 90 > th dose independent rect. 10 2
962 126.35 wind 7 43200 > th dose dependent rect. 23 8
995 126.40 temperature 30 90 < th dose dependent rect. 10 3