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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0589800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0329) R2 : 0.00585
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.0692) R2dN8 : 0.00756 R2N8 : 0.00585
σ : 0.619
deviance : 176.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.17 0.616 3.14 -0.0354 0.00394 0.0452 0.72 1.46 0.134 16.5 4.918 79 -- --
174.61 0.615 3.17 -0.00909 0.0211 -0.276 0.366 -- 0.119 16.8 6.9 82 -- --
173.24 0.613 3.14 -0.0403 0.0333 0.0674 -- 1.17 0.131 17.3 4.9 73 -- --
174.27 0.615 3.17 0.0303 0.00189 -0.473 -- -- 0.128 16.7 7.9 62 -- --
173.28 0.613 3.15 -0.033 -- 0.0454 -- 1.14 0.131 -- 4.908 73 -- --
175.82 0.622 3.17 -0.0289 0.0401 -- 0.179 -- 0.11 17.1 -- -- -- --
175.9 0.621 3.17 -0.0288 0.0412 -- -- -- 0.111 16.8 -- -- -- --
174.26 0.615 3.16 0.026 -- -0.502 -- -- 0.135 -- 8 62 -- --
174.27 0.615 3.16 -- 0.0238 -0.48 -- -- 0.133 20.2 7.909 62 -- --
175.99 0.62 3.17 -0.0303 -- -- -- -- 0.11 -- -- -- -- --
175.92 0.62 3.17 -- 0.0418 -- -- -- 0.114 16.8 -- -- -- --
174.29 0.615 3.16 -- -- -0.494 -- -- 0.13 -- 7.919 62 -- --
176.01 0.619 3.17 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.18 radiation 1.0 90 < th dose independent rect. 14 1
2 164.18 radiation 1.0 90 < th dose dependent rect. 14 1
3 164.18 temperature 30.0 30 < th dose dependent rect. 14 3
4 164.22 temperature 25.0 90 < th dose dependent rect. 15 1
9 164.29 humidity 70.0 90 > th dose independent rect. 14 1
29 165.18 temperature 25.0 90 < th dose independent rect. 14 1
30 165.60 wind 1.0 10 > th dose independent rect. 7 8
36 165.86 humidity 60.0 10 > th dose dependent rect. 15 2
45 166.01 atmosphere 995.0 270 > th dose dependent rect. 11 8
47 166.02 atmosphere 1000.0 270 > th dose dependent rect. 12 4
48 166.03 temperature 20.0 10 < th dose independent rect. 15 1
71 166.11 temperature 20.0 90 < th dose dependent rect. 12 4
76 166.15 temperature 20.0 10 < th dose dependent rect. 12 5
78 166.25 wind 7.0 30 < th dose independent rect. 7 7
92 166.45 atmosphere 1005.0 270 > th dose independent rect. 12 4
93 166.45 radiation 30.0 10 < th dose independent rect. 15 16
105 166.53 humidity 80.0 10 > th dose independent rect. 15 1
117 166.56 atmosphere 1005.0 90 > th dose independent rect. 15 1
122 166.56 atmosphere 1000.0 90 > th dose dependent rect. 15 1
139 166.73 wind 9.0 30 < th dose dependent rect. 10 15
157 166.92 temperature 30.0 10 < th dose independent rect. 7 7
158 166.92 humidity 60.0 10 > th dose independent rect. 15 16
160 166.94 wind 3.0 90 > th dose independent rect. 15 1
167 166.98 radiation 40.0 30 < th dose dependent rect. 14 17
173 167.04 precipitation 0.1 30 < th dose independent rect. 15 16
174 167.04 precipitation 0.1 30 < th dose dependent rect. 15 16
189 167.13 atmosphere 1000.0 10 > th dose independent rect. 7 8
195 167.16 precipitation 0.1 10 < th dose independent rect. 7 8
196 167.16 atmosphere 1000.0 10 > th dose independent rect. 15 16
197 167.16 precipitation 0.1 10 < th dose dependent rect. 7 8
205 167.18 temperature 10.0 10 > th dose independent rect. 7 8
208 167.18 atmosphere 1015.0 10 < th dose independent rect. 7 8
209 167.18 temperature 10.0 10 > th dose independent rect. 15 16
219 167.21 wind 9.0 30 < th dose dependent rect. 7 8
229 167.25 humidity 70.0 270 > th dose independent rect. 7 2
230 167.25 wind 3.0 90 > th dose independent rect. 14 3
231 167.26 wind 5.0 90 < th dose independent rect. 10 14
237 167.27 wind 9.0 10 < th dose independent rect. 15 16
242 167.29 humidity 50.0 90 > th dose independent rect. 6 8
278 167.41 temperature 20.0 90 < th dose independent rect. 12 4
284 167.42 wind 1.0 90 > th dose dependent rect. 13 4
286 167.44 temperature 10.0 1440 > th dose independent rect. 8 8
289 167.44 temperature 10.0 1440 > th dose independent rect. 16 16
302 167.47 radiation 1.0 90 < th dose dependent rect. 10 6
319 167.51 radiation 30.0 90 < th dose dependent rect. 14 3
321 167.52 wind 1.0 10 > th dose independent rect. 7 21
328 167.53 radiation 1.0 10 > th dose independent rect. 7 8
329 167.53 temperature 30.0 30 < th dose independent rect. 15 16
342 167.57 humidity 70.0 270 > th dose independent rect. 7 4
348 167.58 temperature 30.0 270 < th dose independent rect. 16 9
356 167.62 humidity 60.0 270 > th dose independent rect. 16 9
371 167.69 wind 1.0 270 > th dose independent rect. 16 9
385 167.76 wind 5.0 90 < th dose independent rect. 7 17
387 167.76 atmosphere 1015.0 10 < th dose independent rect. 14 17
388 167.76 wind 1.0 10 > th dose independent rect. 7 18
395 167.77 wind 9.0 90 < th dose dependent rect. 7 17
398 167.78 humidity 60.0 270 > th dose independent rect. 19 16
407 167.81 radiation 1.0 90 > th dose independent rect. 18 12
409 167.82 radiation 20.0 90 < th dose independent rect. 14 3
427 167.90 humidity 70.0 270 > th dose independent rect. 16 19
435 167.93 atmosphere 1000.0 270 > th dose independent rect. 16 9
439 167.95 wind 1.0 10 > th dose independent rect. 7 5
446 167.98 wind 3.0 10 < th dose independent rect. 1 9
454 168.01 temperature 30.0 270 < th dose independent rect. 3 9
456 168.01 wind 1.0 90 > th dose dependent rect. 15 1
468 168.06 radiation 30.0 270 < th dose dependent rect. 16 9
482 168.10 radiation 20.0 270 < th dose independent rect. 16 9
492 168.14 wind 3.0 270 > th dose independent rect. 11 8
504 168.17 humidity 50.0 270 > th dose independent rect. 16 20
515 168.20 atmosphere 1000.0 270 > th dose independent rect. 16 20
517 168.21 radiation 1.0 90 > th dose independent rect. 5 1
540 168.23 temperature 10.0 270 > th dose independent rect. 16 9
541 168.23 radiation 40.0 270 < th dose independent rect. 16 9
542 168.23 temperature 10.0 270 > th dose independent rect. 1 15
543 168.23 atmosphere 1015.0 270 < th dose independent rect. 1 15
544 168.23 wind 3.0 10 < th dose dependent rect. 10 2
560 168.27 wind 7.0 10 < th dose dependent rect. 10 4
563 168.28 atmosphere 995.0 270 > th dose independent rect. 1 15
567 168.29 wind 7.0 270 < th dose independent rect. 7 4
568 168.29 wind 9.0 270 < th dose independent rect. 16 9
571 168.29 wind 9.0 270 < th dose independent rect. 16 20
607 168.36 wind 5.0 10 < th dose dependent rect. 1 9
621 168.40 atmosphere 1005.0 90 > th dose independent rect. 5 1
627 168.41 temperature 30.0 270 < th dose independent rect. 16 20
628 168.42 radiation 1.0 270 > th dose independent rect. 6 6
629 168.42 radiation 1.0 90 > th dose independent rect. 14 16
634 168.43 precipitation 0.1 270 < th dose independent rect. 1 15
637 168.43 precipitation 0.1 270 < th dose dependent rect. 1 15
658 168.46 atmosphere 1000.0 270 > th dose independent rect. 12 18
668 168.47 wind 1.0 270 > th dose independent rect. 16 20
706 168.51 humidity 90.0 270 < th dose independent rect. 12 4
739 168.58 wind 3.0 10 < th dose independent rect. 1 6
743 168.58 humidity 50.0 270 > th dose dependent rect. 7 4
746 168.59 temperature 10.0 270 > th dose independent rect. 12 4
748 168.59 atmosphere 1015.0 270 < th dose independent rect. 12 4
754 168.59 temperature 10.0 270 > th dose independent rect. 16 20
767 168.61 precipitation 0.1 270 < th dose independent rect. 12 4
771 168.61 precipitation 0.1 270 < th dose dependent rect. 12 4
805 168.66 humidity 50.0 270 > th dose independent rect. 3 9
823 168.69 atmosphere 995.0 270 > th dose independent rect. 12 4
824 168.69 precipitation 0.1 270 < th dose independent rect. 16 9
826 168.69 precipitation 0.1 270 < th dose dependent rect. 16 9
828 168.70 temperature 15.0 270 > th dose independent rect. 7 4
839 168.72 wind 9.0 270 < th dose independent rect. 3 9
849 168.74 radiation 1.0 270 > th dose independent rect. 7 4
853 168.74 precipitation 0.1 270 < th dose independent rect. 12 15
858 168.74 precipitation 0.1 270 < th dose dependent rect. 12 15
875 168.77 wind 3.0 90 > th dose independent rect. 12 10
893 168.78 wind 1.0 270 > th dose independent rect. 19 16
902 168.79 radiation 1.0 90 < th dose dependent rect. 16 12
906 168.80 wind 9.0 90 < th dose independent rect. 6 23
918 168.83 precipitation 0.1 270 < th dose independent rect. 3 9
923 168.83 precipitation 0.1 270 < th dose dependent rect. 3 9
928 168.84 temperature 15.0 90 > th dose dependent rect. 5 1
932 168.85 temperature 30.0 270 < th dose independent rect. 12 4
959 168.87 wind 1.0 90 > th dose dependent rect. 12 7
970 168.89 precipitation 0.1 270 < th dose independent rect. 16 20
972 168.89 wind 7.0 30 < th dose independent rect. 17 22
973 168.89 precipitation 0.1 270 < th dose dependent rect. 16 20
978 168.90 humidity 80.0 10 > th dose dependent rect. 12 5
983 168.91 wind 9.0 270 < th dose independent rect. 12 4
990 168.92 wind 9.0 270 < th dose independent rect. 12 18
993 168.93 wind 3.0 90 < th dose independent rect. 10 3