Os06g0589600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0589600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.26 | 0.544 | 9.86 | 0.3 | 0.347 | -0.76 | 1.24 | -1.79 | 0.171 | 16.5 | 25.23 | 306 | -- | -- |
| 134.71 | 0.541 | 9.84 | 0.51 | 0.334 | -0.892 | 0.932 | -- | 0.187 | 16.4 | 26.3 | 350 | -- | -- |
| 137.12 | 0.545 | 9.83 | 0.522 | 0.314 | -0.866 | -- | 0.159 | 0.196 | 16.3 | 26.4 | 360 | -- | -- |
| 137.12 | 0.545 | 9.84 | 0.508 | 0.314 | -0.849 | -- | -- | 0.194 | 16.2 | 26.4 | 356 | -- | -- |
| 140.54 | 0.552 | 9.84 | 0.445 | -- | -0.641 | -- | -0.137 | 0.147 | -- | 27.8 | 455 | -- | -- |
| 149.43 | 0.573 | 9.84 | 0.377 | 0.0577 | -- | -0.567 | -- | 0.167 | 5.41 | -- | -- | -- | -- |
| 149.65 | 0.573 | 9.84 | 0.378 | 0.112 | -- | -- | -- | 0.171 | 9.36 | -- | -- | -- | -- |
| 140.49 | 0.552 | 9.84 | 0.457 | -- | -0.644 | -- | -- | 0.156 | -- | 27.77 | 389 | -- | -- |
| 143.62 | 0.558 | 9.85 | -- | 0.255 | -0.726 | -- | -- | 0.139 | 16 | 26.48 | 356 | -- | -- |
| 150.38 | 0.573 | 9.84 | 0.378 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 153.42 | 0.579 | 9.84 | -- | 0.112 | -- | -- | -- | 0.129 | 9.11 | -- | -- | -- | -- |
| 145.8 | 0.562 | 9.85 | -- | -- | -0.592 | -- | -- | 0.103 | -- | 28.17 | 387 | -- | -- |
| 154.14 | 0.58 | 9.85 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.64 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 3 | 130.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 5 | 131.80 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 6 | 131.81 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 7 | 131.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 8 | 131.93 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 10 | 131.94 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 25 | 132.54 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 5 |
| 32 | 132.69 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 35 | 132.75 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 38 | 132.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 55 | 133.16 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 21 |
| 60 | 133.22 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 76 | 133.42 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 121 | 133.94 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 122 | 133.97 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 124 | 133.99 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 129 | 134.03 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 141 | 134.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 142 | 134.20 | wind | 5.0 | 90 | < th | dose independent | rect. | 16 | 3 |
| 143 | 134.20 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 19 | 23 |
| 156 | 134.31 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 168 | 134.37 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 175 | 134.42 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 179 | 134.43 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 181 | 134.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 182 | 134.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 196 | 134.48 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 225 | 134.59 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 230 | 134.61 | radiation | 20.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 270 | 134.66 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 276 | 134.67 | humidity | 80.0 | 90 | < th | dose independent | rect. | 16 | 13 |
| 277 | 134.67 | humidity | 80.0 | 90 | < th | dose independent | rect. | 16 | 15 |
| 327 | 134.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 13 |
| 337 | 134.88 | temperature | 25.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 352 | 134.92 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 405 | 135.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 414 | 135.17 | humidity | 90.0 | 90 | < th | dose independent | rect. | 16 | 3 |
| 418 | 135.18 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 475 | 135.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 477 | 135.36 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 19 |
| 512 | 135.52 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 4 |
| 537 | 135.55 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 545 | 135.58 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 547 | 135.58 | wind | 7.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 551 | 135.58 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 559 | 135.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 572 | 135.63 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 574 | 135.63 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 653 | 135.86 | humidity | 80.0 | 90 | < th | dose independent | rect. | 16 | 6 |
| 662 | 135.87 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 705 | 135.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 714 | 135.96 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 23 |
| 716 | 135.96 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 8 |
| 743 | 136.04 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 16 | 3 |
| 746 | 136.04 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 762 | 136.09 | temperature | 30.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 765 | 136.09 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 806 | 136.14 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 809 | 136.15 | temperature | 30.0 | 90 | > th | dose independent | rect. | 16 | 22 |
| 824 | 136.17 | temperature | 25.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 884 | 136.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 925 | 136.32 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 18 |
| 937 | 136.34 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 966 | 136.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 23 |